Characterization of the complete chloroplast genome of <i>Salix linearistipularis</i> (Franch.) Hao 1936

Ren, Rongrong; Li, Xiaoping

doi:10.1080/23802359.2021.1967809

Mitochondrial DNA Part B

2021

DOI: 10.1080/23802359.2021.1967809

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Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936

Rongrong Ren

Xiaoping Li

Abstract: We characterized the complete chloroplast genome of a perennial woody plant species, Salix linearistipularis , based on high-throughput sequencing and de novo assembly technology for the first time. The complete chloroplast genome of S. linearistipularis is 155,564 bp in length, comprising one large single-copy region (LSC, 84,460 bp), one small single-copy region (SSC, 16,182 bp), and two inverted repeat regions (IRA and IRB, 27,461 bp). The… Show more

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Cited by 3 publications

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“…Here, we revealed the structural characteristics and phylogenetic relationships of chloroplast genes in S. kochiana Trautv. These results are of great significance for the taxonomic study of Salix and even Salicaceae and can also be used to evaluate the breeding availability of Salix at the genomic level (Chen and Liu 2008 ; Ren and Li 2021 ).…”

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The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis

Wang

et al. 2022

Mitochondrial DNA Part B

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Salix kochiana Trautvetter 1837 is one of the highest value shrubs present in northern China with important economic and ecological benefits. This study revealed the structural characteristics and phylogenetic relationships of chloroplast genes in S. kochiana Trautv. The results showed that the length of the complete chloroplast genome was 155,657 bp, which was a typical circular double-stranded structure, including an 84,458 bp large single-copy region (LSC), a 16,221 bp small single-copy region (SSC) and a 27,489 bp pair of inverted repeat regions (IRA and IRB). The chloroplast genome contains 48,757 A bases, 28,017 G bases, 49,843 T bases, and 29,040 C bases, with a GC content of 36.66%. Through bioinformatics annotation, a total of 126 genes were found in the chloroplast genome, including 81 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis showed that S. kochiana Trautv. was closely related to S. triandroides .

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The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis

Wang

et al. 2022

Mitochondrial DNA Part B

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Na2CO3-responsive mechanism insight from quantitative proteomics and SlRUB gene function in Salix linearistipularis seedlings

Song,

Zhang,

Liu

et al. 2024

Tree Physiology

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Mongolian willow (Salix linearistipularis) is a naturally occurring woody dioecious plant in the saline soils of northeastern China that has a high tolerance to alkaline salts. Although transcriptomics studies have identified a large number of salinity-responsive genes, the mechanism of salt tolerance in Mongolian willow is not clear. Here, we found that in response to Na2CO3 stress, Mongolian willow regulates osmotic homeostasis by accumulating proline and soluble sugars, and scavenges ROS by antioxidant enzymes and non-enzymatic antioxidants. Our quantitative proteomics study identified 154 salt-sensitive proteins mainly involved in maintaining the stability of the photosynthetic system and ROS homeostasis to cope with Na2CO3 stress. Among them, Na2CO3-induced rubredoxin (RUB) was predicted to be associated with 122 proteins for modulation of these processes. The chloroplast-localized SlRUB was highly expressed in leaves and significantly induced under Na2CO3 stress. Phenotypic analysis of overexpression, mutation, and complementation materials of RUB in Arabidopsis suggests that SlRUB is critical for the regulation of photosynthesis, ROS scavenging, and other metabolisms in the seedlings of Mongolian willow to cope with Na2CO3 stress. This provides more clues to better understand the alkali-responsive mechanism and RUB functions in the woody Mongolian willow.

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The Development of Forest Genetic Breeding and the Application of Genome Selection and CRISPR/Cas9 in Forest Breeding

Zhao

Tian

Sun

et al. 2022

Forests

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With the birth of classical genetics, forest genetic breeding has laid a foundation in the formation of the basic theories of population genetics, quantitative genetics, cytogenetics, and molecular genetics. Driven by the rapid growth of social demand for wood and other forest products, modern genetics, biotechnology, biostatistics, crop and animal husbandry breeding theories, and technical achievements have been continuously introduced for innovation, thus forming a close combination of genetic basic research and breeding practice. Forest tree breeding research in the world has a history of more than 200 years. By the middle of the 20th century, the forest tree genetic breeding system was gradually formed. After entering the 21st century, the in-depth development stage of molecular design breeding was opened. With the continuous improvement of traditional genetic breeding methods, emerging modern bioengineering technology has also continuously promoted the development of forest genetic breeding. This study mainly summarizes the research history of forest tree genetics and breeding, as well as discusses the application of modern bioengineering technology represented by genome selection and gene editing in forest tree breeding, so as to provide better reference for forest tree breeding research.

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Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936

Cited by 3 publications

References 9 publications

The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis

The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis

Na2CO3-responsive mechanism insight from quantitative proteomics and SlRUB gene function in Salix linearistipularis seedlings

The Development of Forest Genetic Breeding and the Application of Genome Selection and CRISPR/Cas9 in Forest Breeding

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