Characterization of the complete chloroplast genome of <i>Tulipa iliensis</i> (Liliaceae)

Ju, Xiuting; Shi, Guomin; Hou, Zhiqiang; Chao-hai, WU; Liu, Gaofeng; Cao, Caixia; Tang, Nan

doi:10.1080/23802359.2020.1773333

Cited by 6 publications

(4 citation statements)

References 6 publications

(6 reference statements)

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“…In the process of marker selection, we compared existing complete chloroplast genomes of Tulipa species available in public databases to identify suitable markers [ 30 , 31 ]. The markers used in our study were selected based on their demonstrated utility in phylogenetic studies and their potential for reliable amplification and sequencing.…”

Section: Introductionmentioning

confidence: 99%

“…Over the past decade, numerous studies have investigated the genetic diversity of the Liliaceae family and the genus Tulipa , using various genetic barcoding markers and sequencing techniques [ 1 , 5 , 29 , 30 , 31 , 32 , 33 , 34 ]. The generations and analysis of expressed sequence tags in the extremely large genomes of Tulipa were published in 2012.…”

Section: Introductionmentioning

confidence: 99%

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Phylogenetic Analysis of Rare and Endangered Tulipa Species (Liliaceae) of Kazakhstan Based on Universal Barcoding Markers

Sutula,

Kakanay,

Tussipkan

et al. 2024

Biology

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In Kazakhstan, the genus Tulipa is represented by 35 species, 18 of which are listed in the Red Data Book of Kazakhstan and protected by the state. Recent studies of tulip specimens from regions bordering Kazakhstan emphasize the significance of species inventory and report the discovery of several hybrids. In this study, eight tulip species were identified based on morphological characteristics and using DNA barcoding methods. Molecular genetic markers, including nrDNA (ITS) and cpDNA markers (rbcL, matK), of the studied species were sequenced and analyzed using the Bayesian inference and maximum likelihood phylogenetic analysis methods. Our work demonstrates that DNA barcodes based on the ITS, rbcL, and matK marker regions have successful practical applicability, with ITS being the most informative at the intragenic level. However, for distinguishing closely related taxa, the most effective approach would be to use a combined dataset of sequences from multiple DNA markers. The results showed discrepancies in the placement of several taxa (T. kaufmanniana, T. patens), likely due to introgression and natural spontaneous hybridization. The molecular phylogenetic analysis suggests the existence of a previously undescribed hybrid between T. patens and T. alberti. Further detailed population studies are needed to validate this hypothesis.

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Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Phylogenetic Analysis of Rare and Endangered Tulipa Species (Liliaceae) of Kazakhstan Based on Universal Barcoding Markers

Sutula,

Kakanay,

Tussipkan

et al. 2024

Biology

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“…Due to its characteristics of solitary terminal flowers, large and brightly colored petals, strong adaptability, and short growth cycle, Tulipa iliensis possesses high ornamental value and can provide abundant parental materials for breeding purposes. In recent years, research on Tulipa iliensis has mainly focused on genetic diversity [23][24][25][26], seed germination characteristics [27][28][29][30], dormant habits [31], phenological characteristics [32][33][34], chloroplast genome characteristics and other related areas [35]. However, there is currently no research on the distribution trend of Tulipa iliensis under climate change conditions.…”

Section: Introductionmentioning

confidence: 99%

Potentially Suitable Area and Change Trends of <i>Tulipa iliensis</i> under Climate Change

Qin,

Liu,

Tian

et al. 2024

Phyton

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Tulipa iliensis, as a wild plant resource, possesses high ornamental value and can provide abundant parental materials for tulip breeding. The objective of this research was to forecast the worldwide geographical spread of Tulipa iliensis by considering bioclimatic, soil, and topographic variables, the findings of this research can act as a benchmark for the conservation, management, and utilization of Tulipa iliensis as a wild plant resource. Research results indicate that all 12 models have an area under curve (AUC) of the receiver operating characteristic curve (ROC) values greater than 0.968 for the paleoclimatic, current, and future climate scenarios, this suggests an exceptionally high level of predictive accuracy for the models. The distribution of Tulipa iliensis is influenced by several key factors. These factors include the mean temperature of the driest quarter (Bio9), calcium carbonate content (T_CACO 3 ), slope, precipitation of the driest month (Bio14), Basic saturation (T_BS), and precipitation of the coldest quarter (Bio19). During the three paleoclimate climate scenarios, the appropriate habitats for Tulipa iliensis showed a pattern of expansion-contraction expansion. Furthermore, the total suitable area accounted for 13.38%, 12.28%, and 13.28% of the mainland area, respectively. According to the current climate scenario, the High-suitability area covers 61.78472 × 10 4 km 2 , which accounts for 6.57% of the total suitable area, The Midsuitability area covers 190.0938 × 10 4 km 2 , accounting for 20.2% of the total suitable area, this represents a decrease of 63.53%~67.13% compared to the suitable area of Tulipa iliensis under the paleoclimate scenario. Under the Shared Socioeconomic Pathways (SSP) scenarios, in 2050 and 2090, Tulipa iliensis is projected to experience a decrease in the High, Mid, and Low-suitability areas under the SSP126 climate scenario by 7.10% ~12.96%, 2.96%~4.27% and 4.80%~7.96%, respectively. According to the SSP245 scenario, the high suitability area experienced a slight expansion of 2.26% in 2050, but a reduction of 6.32% in 2090. In the SSP370 scenario, the High-suitability areas had a larger reduction rate of 11.24% in 2050, while the Mid-suitability and Low-suitability areas had smaller expansion rates of 0.36% and 4.86%, respectively. In 2090, the High-suitability area decreased by 4.84%, while the Mid and Low-suitability areas experienced significant expansions of 15.73% and 45.89%, respectively. According to the SSP585 scenario, in the future, the High, Mid, and Low-suitability areas are projected to increase by 5.09%~7.21%, 7.57%~17.66%, and 12.30%~48.98%, respectively. The research offers enhanced theoretical direction for preserving Tulipa iliensis' genetic variety amidst evolving climatic scenarios.

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“…Several chloroplast genomes of Tulips have been published, but the cp genome of T. gesneriana is lacking (Ju et al. 2020 ; Li et al. 2021 ).…”

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confidence: 99%

The complete chloroplast genome of Tulipa gesneriana (Liliaceae) and its phylogenetic analysis

Yuan

Yan

Chen

et al. 2022

Mitochondrial DNA Part B

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The complete chloroplast genome sequence of Tulipa gesneriana L. was determined to investigate its phylogenetic position. This plastome is 151,958 base pairs (bp) in length, and comprises two inverted repeat (IRa and IRb) regions of 26,352 bp, a small single-copy region of 17,123 bp and a large single-copy region of 82,131 bp. The GC contents of the cp genome were 36.6%. In total, we annotated 126 genes including 81 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on nine chloroplast genomes indicates that T. gesneriana is closely related to T. iliensis and T. thianschanica .

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Characterization of the complete chloroplast genome of Tulipa iliensis (Liliaceae)

Cited by 6 publications

References 6 publications

Phylogenetic Analysis of Rare and Endangered Tulipa Species (Liliaceae) of Kazakhstan Based on Universal Barcoding Markers

Phylogenetic Analysis of Rare and Endangered Tulipa Species (Liliaceae) of Kazakhstan Based on Universal Barcoding Markers

Potentially Suitable Area and Change Trends of <i>Tulipa iliensis</i> under Climate Change

The complete chloroplast genome of Tulipa gesneriana (Liliaceae) and its phylogenetic analysis

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