The gene encoding the E subunit (atpf?) of the chloroplast ATP synthase of Spinacia oleracea has been overexpressed in Escherichia COK The recombinant protein can be solubilized in 8 M urea and directly diluted into buffer containing ethanol and glycerol t o obtain E that is as biologically active as E purified from chloroplastcoupling factor 1 (CF,). Recombinant E folded i n this manner inhibits the ATPase activity of soluble and membrane-bound CF, deficient in e and restores proton impermeability to thylakoid membranes reconstituted with CF, deficient i n E . Site-directed mutagenesis was used to generate truncations and single amino acid substitutions i n the primary structure of E. I n the five mutants tested, alterations that weaken ATPase inhibition by recombinant E affect its ability t o restore proton impermeability t o a similar extent, with one exception. Substitution of histidine-37 with arginine appears to uncouple ATPase inhibition and the restoration of proton impermeabilty. As in the case of E. coli, it appears that N-terminal truncations of the 4 subunit have more profound effects than C-terminal deletions on the function of E. Recombinant E with six amino acids deleted from the C terminus, which is the only region of significant mismatch between the E of spinach and the E of Pisum sativum, inhibits ATPase activity with a reduced potency similar t o that of purified pea E . Four of the six amino acids are serine or threonine.These hydroxylated amino acids may be important in E-CF, interactions.The chloroplast ATP synthase (CF,CFo) catalyzes the phosphorylation of ADP to ATP at the expense of the proton gradient. The ATP synthase is biochemically separable into two parts: CF,, a membrane-integrated protein complex that translocates protons, and CF,, the catalytic portion of the CF,CFo complex. CF, consists of five different types of subunits, denoted a, p, y, 6, and E, in order of decreasing molecular weight, with a stoichiometry of a,P,y8~. On illuminated thylakoid membranes, CF, catalyzes ATP synthesis at high rates. In the dark, the enzyme usually does not catalyze ATP hydrolysis, even though hydrolysis is thermodynamically favorable. Thus, when thylakoid membranes are illuminated, the ATP synthase activity is rapidly switched on (McCarty et al., 1988).The transition of CF,CFo from an active state to an inactive state is tightly regulated. The suppression of wasteful ATPase activity in the dark requires the presence Supported by National Science Foundation grants MCB 94