A basic b-galactosidase with high specificity toward b-(1/3)-and b-(1/6)-galactosyl residues was cloned from radish (Raphanus sativus) plants by reverse transcription-PCR. The gene, designated RsBGAL1, contained an open reading frame consisting of 2,532 bp (851 amino acids). It is expressed in hypocotyls and young leaves. RsBGAL1 was highly similar to b-galactosidases having exo-b-(1/4)-galactanase activity found in higher plants and belongs to family 35 of the glycosyl hydrolases. Recombinant RsBGAL1 was expressed in Pichia pastoris and purified to homogeneity. The recombinant enzyme specifically hydrolyzed b-(1/3)-and b-(1/6)-galactooligosaccharides, the same substrates as the native enzyme isolated from radish seeds (Sekimata et al., 1989). It split off about 90% of the carbohydrate moieties of an arabinogalactan protein extracted from radish roots in concerted action with microbial a-L-arabinofuranosidase and b-glucuronidase. These results suggest that RsBGAL1 is a new kind of b-galactosidase with different substrate specificity than other b-galactosidases that exhibit exo-b-(1/4)-galactanase activity. The C-terminal region (9.6 kD) of RsBGAL1 is significantly similar to the Gal lectinlike domain, but this region is not retained in the native enzyme. Assuming posttranslational processing of RsBGAL1 with elimination of the Gal lectin-like domain results in a protein consisting of two subunits with molecular masses of 46 and 34 kD (calculated from the RsBGAL1 gene sequence). This is in good agreement with the SDS-PAGE and matrix-assisted laser desorption/ionization-time-of flight mass spectrometry measurements for subunits of the native enzyme (45 and 34 kD) and may thus partially explain the formation process of the native enzyme.The enzyme group of b-galactosidases (EC 3.2.1.23) is widely distributed in higher plants. Plant b-galactosidases can be divided into at least two classes according to substrate specificity: one class that comprises exo-b-(1/4)-galactanases that specifically act on pectic b-(1/4)-galactan (sugars in this study are D series unless designated otherwise), and a second class that prefers p-nitrophenyl-b-galactoside (PNPb-Gal) and lacks hydrolytic activity toward b-(1/4)-galactan (in this study, we call the former enzymes b-galactosidase/exo-b-(1/4)-galactanases). In the tomato (Lycopersicon esculentum), b-galactosidase/exob-(1/4)-galactanase activity significantly increases due to specific expression of the enzyme proteins during fruit ripening. This indicates their role in the degradation of b-(1/4)-galactan side chains of pectins as part of the ripening process. On the other hand, the activity level of the second class of b-galactosidase does not markedly change during ripening (Carey et al., 1995;Smith et al., 1998;Smith and Gross, 2000). Since the in vivo substrates for the second class of b-galactosidase is not yet identified, their functions in plant growth and development remain elusive.Arabinogalactan proteins (AGPs), a family of proteoglycans found in higher plants, consist of a...