Characterization of draft mitochondrial genome of guava trunk borer, <i>Aristobia reticulator</i> (Fabricius, 1781) (Coleoptera: Cerambycidae: Lamiinae) from India

Behere, G. T.; Tay, Wee Tek; Firake, D. M.; Kunz, Daniele; Burange, P. S.; Ramamurthy, V. V.

doi:10.1080/23802359.2019.1602004

Cited by 5 publications

(4 citation statements)

References 10 publications

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“… 2020 ), Aristobia reticulator MK423971 (Behere et al. 2019 ), Anoplophora chinensis KT726932 (Li W et al. 2016 ), Oberea diversipes MN709785 (Tian and Wang 2020 ), Agelasta perplexa MW067123 (Li et al.…”

Section: Resultsmentioning

confidence: 99%

Complete mitochondrial genome of Pseudoechthistatus hei (Coleoptera: Cerambycidae: Lamiinae) and its phylogenetic analysis

Bai

Yang

et al. 2022

Mitochondrial DNA Part B

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The little-known genus Pseudoechthistatus Pic, 1917 belongs to the subfamily Lamiinae of the family Cerambycidae. Adult Pseudoechthistatus hei Xie and W. Wang, 2019 specimens were collected from Bāijì Hill, Xīntángfáng Village, Wéixī County, Yúnnán Province, China. The complete mitochondrial genome (GenBank accession number: ON641973.1) of P. hei was sequenced, annotated, and characterized; it is a circular DNA molecule of 16,103 bp with a 75.71% AT content, and it comprised 13 protein-coding genes (PCG), 22 tRNA genes, two rRNA genes, and 1 control region. The PCGs initiated with the typical ATN (Met) start codons, and were terminated by typical TAN stop codons. The Bayesian Inference phylogenetic tree was first constructed using JTT + F + I + G4 model for P. hei , which showed that P. hei was closely related to Monochamus alternatus alternatus .

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Section: Resultsmentioning

confidence: 99%

Complete mitochondrial genome of Pseudoechthistatus hei (Coleoptera: Cerambycidae: Lamiinae) and its phylogenetic analysis

Bai

Yang

et al. 2022

Mitochondrial DNA Part B

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“…All mitochondrial genome sequences were manually proofread and spliced using DNASTAR Package v.6.0 software [ 43 ] and tRNA gene annotation was completed through the online website MITOS ( , accessed on 15 January 2021) [ 44 ]. The complete sequences of some Cerambycidae species were obtained from the GenBank database [ 1 , 2 , 11 , 45 , 46 , 47 , 48 , 49 , 50 , 51 , 52 , 53 ], and homologous sequence alignments were performed by the Clustal W program of Mega 7.0 [ 38 ] to determine the positions of the two rRNA genes and the AT-rich region. The four mitogenomes were deposited in GenBank with the accession numbers MW858148, MW858150-MW858152.…”

Section: Methodsmentioning

confidence: 99%

Mitogenome Analysis of Four Lamiinae Species (Coleoptera: Cerambycidae) and Gene Expression Responses by Monochamus alternatus When Infected with the Parasitic Nematode, Bursaphelenchus mucronatus

Zhang

Guan

Cao

et al. 2021

Insects

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We determined the mitochondrial gene sequence of Monochamus alternatus and three other mitogenomes of Lamiinae (Insect: Coleoptera: Cerambycidae) belonging to three genera (Aulaconotus, Apriona and Paraglenea) to enrich the mitochondrial genome database of Lamiinae and further explore the phylogenetic relationships within the subfamily. Phylogenetic trees of the Lamiinae were built using the Bayesian inference (BI) and maximum likelihood (ML) methods and the monophyly of Monochamus, Anoplophora, and Batocera genera was supported. Anoplophora chinensis, An. glabripennis and Aristobia reticulator were closely related, suggesting they may also be potential vectors for the transmission of the pine wood pathogenic nematode (Bursaphelenchus xylophilus) in addition to M. alternatus, a well-known vector of pine wilt disease. There is a special symbiotic relationship between M. alternatus and Bursaphelenchus xylophilus. As the native sympatric sibling species of B. xylophilus, B. mucronatus also has a specific relationship that is often overlooked. The analysis of mitochondrial gene expression aimed to explore the effect of B. mucronatus on the energy metabolism of the respiratory chain of M. alternatus adults. Using RT-qPCR, we determined and analyzed the expression of eight mitochondrial protein-coding genes (COI, COII, COIII, ND1, ND4, ND5, ATP6, and Cty b) between M. alternatus infected by B. mucronatus and M. alternatus without the nematode. Expression of all the eight mitochondrial genes were up-regulated, particularly the ND4 and ND5 gene, which were up-regulated by 4–5-fold (p < 0.01). Since longicorn beetles have immune responses to nematodes, we believe that their relationship should not be viewed as symbiotic, but classed as parasitic.

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“…Studies to-date including analyses of global B. tabaci cryptic species complex partial mtCOI sequences have regularly used the Kimura-2-parameter (i.e., K2P) nucleotide substitution model to estimate species boundary 2,10,58 . The K2P model assumed equal base compositions (i.e., A=G=T=C) 59 and violates the general mitochondrial DNA nucleotide compositions in Arthropods which is typically A-T rich (e.g., Lepidoptera 16,60,61 ; Coleoptera 62,63 ; Bemisia spp. e.g., Kunz et al 22 ; Tay et al 23 ).…”

Section: Methodsmentioning

confidence: 99%

Take out the rubbish – Removing NUMTs and pseudogenes from theBemisia tabacicryptic species mtCOI database

Kunz

Tay

Elfékih

et al. 2019

Preprint

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Identification ofBemisia tabacicryptic whitefly species complex currently relies on molecular characterisation of the mitochondrial DNA cytochrome oxidase subunit I (mtCOI) partial gene, however, nuclear mitochondrial sequences (NUMTs), PCR-derived pseudogenes and/or poor sequence editing have hindered this effort. To-date,ca.5,175 partial (≥ 300bp) mtCOI sequences for species identification purposes have been reported. We reviewedca.10% of sequences representing the standardB. tabacispecies complex mtCOI dataset. We found that 333 sequences (64.9%) were NUMTs, pseudogenes and/or affected by poor sequence quality. Amino acid pattern analyses of high throughput sequencing-derived mtCOI gene from 24 ‘tabaci’ and ‘non-tabaci’ species enabled differentiation between NUMTs/pseudogene-affected and likely real mtCOI sequences, and that the SSA4, SSA5/SSA8, AsiaII-2 and AsiaII_4 species were NUMTs/pseudogenes artefacts. Intra-specific uncorrected nucleotide distances (p-dist) from our up-dated dataset ranged from 0-1.98%, inter-specificp-dist within phylogenetic clades ranged betweenca.2.5 and 8%, and 8 and >19% for species between phylogenetic clades. Differentiating between closely related species could therefore utilise an ‘average’p-dist of 2.5%. Despite the smallerB. tabacimtCOI dataset, six putative new species were identified. Adoption of our standardised workflow and up-dated mtCOI clean dataset could facilitate better diagnostics ofB. tabaciand ‘non-tabaci’ cryptic species.

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Characterization of draft mitochondrial genome of guava trunk borer, Aristobia reticulator (Fabricius, 1781) (Coleoptera: Cerambycidae: Lamiinae) from India

Cited by 5 publications

References 10 publications

Complete mitochondrial genome of Pseudoechthistatus hei (Coleoptera: Cerambycidae: Lamiinae) and its phylogenetic analysis

Complete mitochondrial genome of Pseudoechthistatus hei (Coleoptera: Cerambycidae: Lamiinae) and its phylogenetic analysis

Mitogenome Analysis of Four Lamiinae Species (Coleoptera: Cerambycidae) and Gene Expression Responses by Monochamus alternatus When Infected with the Parasitic Nematode, Bursaphelenchus mucronatus

Take out the rubbish – Removing NUMTs and pseudogenes from theBemisia tabacicryptic species mtCOI database

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