Luminescent bacteria in the family Vibrionaceae (Bacteria: γ-Proteobacteria) are commonly found in complex, bilobed light organs of sepiolid and loliginid squids. Although morphology of these organs in both families of squid is similar, the species of bacteria that inhabit each host has yet to be verified. We utilized sequences of 16S ribosomal RNA, luciferase α-subunit (luxA) and the glyceraldehyde-3-phosphate dehydrogenase (gapA) genes to determine phylogenetic relationships between 63 strains of Vibrio bacteria, which included representatives from different environments as well as unidentified luminescent isolates from loliginid and sepiolid squid from Thailand. A combined phylogenetic analysis was used including biochemical data such as carbon use, growth and luminescence. Results demonstrated that certain symbiotic Thai isolates found in the same geographic area were included in a clade containing bacterial species phenotypically suitable to colonize light organs. Moreover, multiple strains isolated from a single squid host were identified as more than one bacteria species in our phylogeny. This research presents evidence of species of luminescent bacteria that have not been previously described as symbiotic strains colonizing light organs of Indo-West Pacific loliginid and sepiolid squids, and supports the hypothesis of a non-species-specific association between certain sepiolid and loliginid squids and marine luminescent bacteria.Members of the families Loliginidae and Sepiolidae (Mollusca: Cephalopoda) have been previously shown to contain luminous bacteria that reside in specialized light organ complexes. These light organs vary in structure and complexity, from simple, spherically shaped structures [Rondeletiola and Sepiolina;(Naef, 1912a;Nesis, 1982)], to complex, bilobed organs (Naef, 1912b;McFall-Ngai and Montgomery, 1990;Foster et al., 2002;Nishiguchi et al., 2004).Squid use the light produced from the bacteria for a behavior known as counterillumination (Young and Roper, 1977;Young et al., 1980;Jones and Nishiguchi, 2004). Luminescence emitted from the light organ reduces the squid's silhouette to match the intensity and wavelength of down-welling light (Young and Roper, 1977). This provides squid with a mechanism that allows them to evade predators by camouflage. All bacteria housed in the light organs are able to produce light via the lux operon both inside the light organs and in their free-living state, although intensity of light and differences between strains of bacteria have never been thoroughly investigated. Likewise, regulation of the lux operon inside the light organ of squid has only been extensively studied in the Euprymna scolopes-Vibrio (Visick et al., 2000).Previous investigations have demonstrated that two genera, Vibrio and Photobacterium, are prevalent in both sepiolid and loliginid squid (Fidopiastis et al., 1998;Nishiguchi et al., 2004). Sepiolid squid primarily contain two species of Vibrio, V. fischeri and V. logei (Fidopiastis et al., 1998;Nishiguchi, 2002), altho...