Fish aggression has significant individual differences, and different personalities exhibit distinct behavioral performances and physiological stress responses. Under intensive culture conditions, Sebastes schlegelii juveniles display severe aggression and cannibalism, causing fish welfare and economic loss. Herein, we investigated the alterations in behavioral performance and physiological stress indicators of Sebastes schlegelii juveniles with different aggressive strengths. The results revealed that latency to the first movement, distance to center-point, mobile frequency, and immobile frequency were significantly lower in high-aggressive individuals than low-aggressive individuals. In contrast, the immobile time was significantly higher in high-aggressive individuals compared to low-aggressive individuals. PCA was performed to identify the key parameters of fish behavior. From the results of PCA, position, motion state, and physical status could be used as behavioral screening indicators for individuals with different aggressions. The 5-HIAA/5-HT ratio was significantly lower in high-aggressive individuals than in low-aggressive individuals. Moreover, cortisol levels were positively correlated with immobile time, and the ratio of 5-HIAA/5-HT was significantly and positively correlated with the distance to the central point. These results suggest that different aggressive individuals can be identified according to position, motion state, and physical status in a short period of time, while the distance to center-point associated with brain monoaminergic activity may be a more accurate indicator. The results not only provide a non-invasive method for reducing fish aggression but also help to enhance precise management in aquaculture.