Abstract:The low physiological relevant concentrations of most ROS/RNS call for new sensing reactions with better selectivity, kinetics, and reversibility; fluorophores with high quantum yield, wide wavelength coverage, and Stokes shifts; and structural design with good aqueous solubility, membrane permeability, low protein interference, and organelle specificity. Antioxid. Redox Signal. 29, 518-540.
“…),10 reactive nitrogen species (RNS, including ONOO – , NO, NO 2 , HNO, etc. ),11 reactive sulfur species (RSS, including GSH, Hcy, Cys, H 2 S, H 2 S n , SO 2 derivatives, etc. ),1e,f,12 ATP,13 HCHO14 and so on.…”
The dynamic fluctuations of bioactive species in living cells are associated with numerous physiological and pathological phenomena. The emergence of organelle-targeted fluorescent probes has significantly facilitated our understanding on the biological functions of these species. This review describes the design, applications, challenges and potential directions of organelle-targeted bioactive species probes.
“…),10 reactive nitrogen species (RNS, including ONOO – , NO, NO 2 , HNO, etc. ),11 reactive sulfur species (RSS, including GSH, Hcy, Cys, H 2 S, H 2 S n , SO 2 derivatives, etc. ),1e,f,12 ATP,13 HCHO14 and so on.…”
The dynamic fluctuations of bioactive species in living cells are associated with numerous physiological and pathological phenomena. The emergence of organelle-targeted fluorescent probes has significantly facilitated our understanding on the biological functions of these species. This review describes the design, applications, challenges and potential directions of organelle-targeted bioactive species probes.
“…Since their discovery, fluorescent probes have been engineered to accurately monitor and quantify in real-time an increasing variety of physiological parameters in living cells such as ion concentration variations [1] , cysteines [2] , pH [3] , enzymatic activity [4] or oxidative stress [5] , [6] , [7] , [8] , but also various cellular compounds [9] , [10] , [11] , [12] . Genetically-encoded fluorescent proteins are of particular interest as they can be addressed to specific organelles, such as the nucleus or the mitochondria, allowing a subcellular resolution [13 , 14] .…”
Genetically encoded ratiometric fluorescent probes are cutting-edge tools in biology. They allow precise and dynamic measurement of various physiological parameters within cell compartments. Because data extraction and analysis are time consuming and may lead to inconsistencies between results, we describe here a standardized pipeline for
Semi-automated treatment of time-lapse fluorescence microscopy images.
Quantification of individual cell signal.
Statistical analysis of the data.
First, a dedicated macro was developed using the FIJI software to reproducibly quantify the fluorescence ratio as a function of time. Raw data are then exported and analyzed using R and MATLAB softwares. Calculation and statistical analysis of selected graphic parameters are performed. In addition, a functional principal component analysis allows summarizing the dataset. Finally, a principal component analysis is performed to check consistency and final analysis is presented as a visual diagram. The method is adapted to any ratiometric fluorescent probe. As an example, the analysis of the cytoplasmic HyPer probe in response to an acute cell treatment with increasing amounts of hydrogen peroxide is shown. In conclusion, the pipeline allows to save time and analyze a larger amount of samples while reducing manual interventions and consequently increasing the robustness of the analysis.
“…And the large size of the uorescent protein may affect the function of the fused protein. [21][22][23] Another popular method of uorescence imaging is uorescence immunohistochemical staining, 7,21,22 but it requires cell xation and permeabilization, which can possibly lead to defects, including protein extraction or relocalization, epitope blockage and inability to perform real-time imaging. Thus, information obtained about certain biological processes may be incorrect or missing.…”
Section: Introductionmentioning
confidence: 99%
“…Small-molecule uorescent probes have become powerful tools for biological detections due to the advantages of easy synthesis, wide varieties, simple operation, high selectivity, fast recognition, and so on. 23,35,36 Among the uorescent probes, intensity-based uorescent probes are not suitable for quantitative analysis because they are affected by many factors, including probe concentration variation and uneven distribution, temperature, environmental polarity, and excitation light uctuation. [37][38][39][40][41] In contrast, ratiometric probes can overcome the systematic errors and are more accurate for quantication.…”
An AIE-active ratiometric probe for the first time achieved the long-term quantification of lysosomal pH during the medaka larva's caudal fin regeneration.
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