Abstract. We describe the third version of Minnesota Earth System Model for Ocean
biogeochemistry (MESMO 3), an Earth system model of intermediate complexity,
with a dynamical ocean, dynamic–thermodynamic sea ice, and an energy–moisture-balanced atmosphere. A major feature of version 3 is the flexible
C:N:P ratio for the three phytoplankton functional types represented in the
model. The flexible stoichiometry is based on the power law formulation with
environmental dependence on phosphate, nitrate, temperature, and light.
Other new features include nitrogen fixation, water column denitrification,
oxygen and temperature-dependent organic matter remineralization, and
CaCO3 production based on the concept of the residual nitrate potential
growth. In addition, we describe the semi-labile and refractory dissolved organic
pools of C, N, P, and Fe that can be enabled in MESMO 3 as an optional
feature. The refractory dissolved organic matter can be degraded by
photodegradation at the surface and hydrothermal vent degradation at the
bottom. These improvements provide a basis for using MESMO 3 in further
investigations of the global marine carbon cycle to changes in the
environmental conditions of the past, present, and future.