Background/Aim: Pyra-Metho-Carnil (PMC) has been identified as a novel candidate compound for treating numerous malignancies; however, its mechanism of action remains unknown. In this study, we conducted RNA-sequencing (RNA-seq) analyses to elucidate the mechanism of PMC against human colorectal cancer cells harboring mutant KRAS (mtKRAS). Materials and Methods: RNA-seq analyses of the HKe3-wild-type KRAS and HKe3-mtKRAS spheroids treated with DMSO or PMC for 6 days were performed. Results: RNAseq data suggested that PMC treatment suppresses the aerobic glycolysis pathway in HKe3-mtKRAS spheroids through the down-regulation of the HIF1 pathway. Indeed, treatment with PMC markedly suppresses the absorption of glucose by spheroids and the secretion of lactate from them. Conclusion: PMC suppresses growth of cancer spheroid through downregulation of cancer-specific glucose metabolism.
KRAS is a key molecule in the aberrant proliferation and malignant progression of cancer cells (1, 2).Activated KRAS or KRAS-related tumor-promoting pathways are important targets for cancer therapeutics.Inhibitors of KRAS with specific mutations such as G12C (sotorasib) have been developed; however, 10% of oncogenic KRAS mutations are attributable to the G12C mutation (3-5). In addition, the efficacy of direct KRAS inhibitors and inhibitors of downstream KRAS signals targeting BRAF and MEK is temporal because cells often acquire drug resistance (6-8). Remarkably, conventional cancer treatments exhibited considerable toxicity when administered as therapy (9). To overcome these problems, we developed two isogenic colorectal cancer-derived HKe3 cell lines, whose endogenous allele of mutant KRAS (mtKRAS) G13D was disrupted and reexpressed either wild-type KRAS (wtKRAS; normal cell model) or mtKRAS G13D (cancer cell model) (10,11). Further, we conducted a screening process on these cells to find natural compounds that selectively and effectively eliminate cancer spheroids. We identified a compound, Pyra-Metho-Carnil (PMC), which exhibits a specific antitumor activity for HKe3-mtKRAS spheroids (12). Furthermore, PMC demonstrates growth-restricting properties against cancer spheroids with various genetic mutations, regardless of tissue type ( 12), suggesting that PMC can target common features of cancer spheroids. However, the exact mechanisms of how PMC exerts its effects remain uncertain. In this study, we used RNAsequencing (RNA-seq) analyses on cancer spheroids treated with PMC for 6 days and revealed the mechanisms underlying the PMC-induced tumor growth inhibition.
Materials and MethodsCompounds. PMC (IUPAC Name: 1-{3-[(3,5-dimethylpyrazol-1yl)methyl]-4-methoxyphenyl}-2,3,4,9-tetrahydro-1H-pyrido[3,4b]indole) was synthesized by Namiki Shoji Co., Ltd. (Tokyo, Japan) as described previously (12).