Pseudomonas sp. strain M18, an effective biological control agent isolated from the melon rhizosphere, has a genetic background similar to that of the opportunistic human pathogen Pseudomonas aeruginosa PAO1. However, the predominant phenazine produced by strain M18 is phenazine-1-carboxylic acid (PCA) rather than pyocyanin (PYO); the quantitative ratio of PCA to PYO is 105 to 1 at 28°C in strain M18, while the ratio is 1 to 2 at 37°C in strain PAO1. We first provided evidence that the differential production of the two phenazines in strains M18 and PAO1 is related to the temperature-dependent and strain-specific expression patterns of phzM, a gene involved in the conversion of PCA to PYO. Transcriptional levels of phzM were measured by quantitative real-time PCR, and the activities of both transcriptional and translational phzM-lacZ fusions were determined in strains M18 and PAO1, respectively. Using lasI::Gm and ptsP::Gm inactivation M18 mutants, we further show that expression of the phzM gene is positively regulated by the quorum-sensing protein LasI and negatively regulated by the phosphoenolpyruvate phosphotransferase protein PtsP. Surprisingly, the lasI and ptsP regulatory genes were also expressed in a temperature-dependent and strain-specific manner. The differential production of the phenazines PCA and PYO by strains M18 and PAO1 may be a consequence of selective pressure imposed on P. aeruginosa PAO1 and its relative M18 in the two different niches over a long evolutionary process.Phenazines, known for over 150 years, are a group of the nitrogen-containing secondary metabolites synthesized mainly by Pseudomonas spp. and a few other bacterial strains. Advances within the past 2 decades have provided significant new insights into the genetics, biochemistry, and regulation of phenazine synthesis, as well as the mode of action and functional roles of these compounds in various environments (33,44). Despite the fact that the phenazine biosynthesis locus is highly conserved among various Pseudomonas spp., individual strains differ in the range of phenazine compounds they produce and the relative amounts of the possible phenazines are strongly influenced by growth conditions (7,30,34,61). The crucial roles of phenazine-1-carboxylic acid (PCA) in plant root disease suppression has been well documented in studies with several biological control strains, such as Pseudomonas fluorescens 2-79, P. chlororaphis 30-84, and P. chlororaphis PCL1391, where PCA can be converted into phenazine-1-carboxamide (PCN) (6,33,35,37,50). Nevertheless, PCA is considered a predominant phenazine (44) in these strains, and its secretion mainly contributes to the biocontrol activity against various fungal phytopathogens such as Gaeumannomyces graminis var. tritici (41,49,50). Chromosomal insertion of genes involved in the PCA biosynthetic pathway enhances the efficacy of damping-off disease control by P. fluorescens. The phenazine-deficient strains P. fluorescens 2-79 and P. chlororaphis 30-84 have reduced survival rates and a dimini...