Membrane-bound ATPase was found in membranes of the archaebacterium Methanosarcina barkeri. The ATPase activity required divalent cations, Mg2' or Mn2 , and maximum activity was obtained at pH 5.2. The activity was specifically stimulated by HS03-with a shift of optimal pH to 5.8, and N,N'-dicyclohexylcarbodiimide inhibited ATP hydrolysis. The enzyme could be solubilized from membranes by incubation in 1 mM Tris-maleate buffer (pH 6.9) containing 0.5 mM EDTA. The solubilized ATPase was purified by DEAE-Sepharose and Sephacryl S-300 chromatography. The molecular weight of the purified enzyme was estimated to be 420,000 by gel filtration through Sephacryl S-300. Polyacrylamide gel electrophoresis in sodium dodecyl sulfate revealed two classes of subunit, Mr 62,000 (a) and 49,000 (Ii) associated in the molar ratio 1:1. These results suggest that the ATPase of M. barkeri is similar to the FoF, type ATPase found in many eubacteria.Methanogenic bacteria are strictly anaerobic organisms, and most species are able to grow autotrophically with H2 and CO2 as substrates for methanogenesis. On the basis of studies of the 16S RNA sequence, they are considered to belong to the archaebacteria (1). Other properties of methanogens are also different from those of the eubacteria; the membranes of methanogens contain ether-linked polyisoprenoid glycerol lipids (30) and their cell walls lack peptidoglycan (14). Apart from methanogens, the archaebacteria include extreme halophiles and thermoacidophiles.In the chemiosmotic mechanism of Mitchell (20), a proton motive force established across the cell membrane is a driving force for ATP synthesis. An H+-translocating ATPase (FoF1 ATPase) which catalyzes ATP synthesis has been observed in membranes of both eucaryotes and eubacteria (26). Although membrane-bound ATPase activities were found in membranes of thermoacidophilic archaebacteria, Thermoplasma (28), and Sulfolobus (32) Solubilization and purification of the ATPase. The membrane fraction was suspended in 1 mM Tris-maleate buffer (pH 6.9) containing 0.5 mM EDTA. After incubation at 8°C for 1 h with gentle stirring, the suspension was centrifuged at 100,000 x g for 90 min. The supernatant (42 ml, 2.4 mg of protein per ml) was applied to a DEAE-Sepharose column (2.6 by 20 cm) equilibrated with 50 mM Tris-maleate (pH 6.9) (column buffer). After the column had been washed with one column volume of the column buffer, a linear gradient from 0 to 0.6 M NaCl in 50 mM Tris-maleate buffer (pH 6.9) was run at 8°C. The fractions containing ATPase activity were pooled (15 ml), and solid ammonium sulfate was added up to reach 65% saturation. The precipitate obtained after centrifugation at 10,000 x g for 20 min was dissolved in a minimal volume of 50 mM Tris-maleate buffer (pH 6.9), and the solution was centrifuged to remove any insoluble material. The supernatant was then applied to a Sephacryl S-300 column (1.6 by 80 cm) equilibrated with the column buffer. The flow rate was 10 ml/min at 8°C, and the fractions with ATPase activity were collec...