The recent development of single-molecule techniques has been largely targeted at solving biological problems; [1][2][3][4][5] for example, protein folding has been examined by means of force spectroscopy, and enzyme kinetics have been investigated by single-molecule fluorescence. These approaches provide insight into individual trajectories that might be obscured in ensemble measurements. In contrast, bondforming and bond-breaking reactions of small molecules in solution have rarely been observed at the single-molecule level. We have developed an approach through which the covalent chemistry of individual molecules can be monitored in an aqueous environment inside a "nanoreactor", that is, the transmembrane protein pore formed by a-hemolysin.[6-9] By monitoring an ionic current driven through the pore by a transmembrane potential, subtle changes in the structures of individual reactants tethered within the lumen can be detected. We now use this approach to follow both the formation of a chiral center at As III (through the making of an As À S bond) and the inversion taking place at that center. The nanoreactor also serves to isolate the relatively short-lived As III adduct and thereby prevent additional reaction steps that would complicate the chemistry. AsÀS bond making and breaking are important reactions in pharmacology, toxicology, [10][11][12][13] and experimental cell biology. [14,15] We earlier reported reversible covalent As À S bond formation between the side chain of a cysteine residue at position 117 in the a-hemolysin pore and 4-sulfophenylarsonous acid (Figure 1 a).[9] Herein, we examine the same reaction at a different position within the nanoreactor (residue 137) and observed two distinct conductance levels, which corresponded to the formation of two As À S adducts at the wall of the protein (see Figure 1 b). Re-examination of the earlier data from the reaction at position 117 also revealed two current levels, but they were very closely spaced. The unitary conductance of P 137-SH -a heteromeric pore with just one of the seven subunits containing a cysteine residue at position 137-in 2 m KCl at À50 mV is (1.71 AE 0.04) nS (this is Figure 1. Two adducts are formed when 4-sulfophenylarsonous acid reacts with the side chain of Cys-137 in the P 137-SH pore. a) Structure of 4-sulfophenylarsonous acid and schematic of the P 137-SH pore. In aqueous solution, the dehydrated form, that is, 4-sulfophenylarsane oxide, may exist in equilibrium with 4-sulfophenylarsonous acid. The P 137-SH pore consists of six cysteine-free wild-type subunits (green) and one mutated subunit (blue) in which Gly 137 is substituted by Cys. The sulfur atom of the Cys residue is shown in yellow, the carboxy oxygen of residue 137 in red. b) Single-channel recording at À50 mV and 23 8C with a buffer containing 2 m KCl, 80 mm 3-(4-morpholinyl)-1-propanesulfonic acid (MOPS), 100 mm ethylenediaminetetraacetate (EDTA) (pH 8.4) in both chambers. 4-Sulfophenylarsonous acid (100 mm) was in the trans chamber. The current levels corresponding ...