Flood is one of the major problems of the sad ekbatan watershed, northern of Hamadan province, Iran. This problem imposes high damages to the economic issue. Therefore, prioritization of the study area based on the flooding degree can be considered for identifying hot spot flooded areas for performing soil and water conservation practices. In this study, in order to prioritize sub-watersheds of the case study from viewpoint of flooding degree, five flood-related criteria i.e. entropy of drainage network (En), index of connectivity (IC), stream power index (SPI), curvature (C) and curve number (CN) were considered, then fuzzy based Best Worse Multi Criteria Decision Making (F-BWM) Method was used to assigning weights to used criteria and combination them to achieve flooding degree for each sub-watershed. The results of prioritization of sub-watersheds indicated that the sub-watersheds 14 and 21 are most and least susceptibility areas to flooding correspondingly.