Background: Health inequalities in Scotland have been well documented, including the contribution of different causes to inequalities in mortality. Our aim was to estimate inequalities within a burden of disease framework, accounting for both premature mortality and the effects of morbidity, to understand the contribution of specific diseases to health inequalities prior to the COVID-19 pandemic. Methods: Disability Adjusted Life Years (DALYs) for 13 disease groupings and 70 individual causes of disease and injury were sourced from the Scottish Burden of Disease Study. Area level deprivation was measured using the Scottish Index of Multiple Deprivation. Inequalities were measured by the range, Relative Index of Inequality, Slope Index of Inequality, and attributable DALYs were estimated by using the least deprived deciles as a reference. Results: Marked inequalities were observed across several measures. The overall disease burden was double that in the most deprived areas (50,355 vs 20,955 DALYS per 100, 000), largely driven by inequalities in premature mortality. The rate in the most deprived areas was around 48% higher than the mean population rate (RII = 0.96), with 35% of DALYs attributed to differences in area-based deprivation. Many of the leading causes of disease burden in 2019 – heart disease, drug use disorders, lung cancer and COPD – were also the leading drivers of absolute and relative inequalities in the disease burden. Conclusion: This study demonstrates that even before the COVID-19 pandemic there continues to be a steep stepwise gradient in the burden of disease experienced across the Scottish population. This was evident for premature mortality and morbidity and almost every specific cause of death. Keywords: Burden of disease; DALY; Disability-adjusted life year; Inequalities; Population health; Scottish burden of disease.