The cytokine
TNF
drives inflammatory diseases, e.g., Crohn's disease. In a mouse model of
TNF
‐induced systemic inflammatory response syndrome (
SIRS
), severe impact on intestinal epithelial cells (
IEC
s) is observed. Zinc confers complete protection in this model. We found that zinc no longer protects in animals which lack glucocorticoids (
GC
s), or express mutant versions of their receptor
GR
in
IEC
s, nor in mice which lack gut microbiota.
RNA
‐seq studies in
IEC
s showed that zinc caused reduction in expression of constitutive (
STAT
1‐induced) interferon‐stimulated response (
ISRE
) genes and interferon regulatory factor (
IRF
) genes. Since some of these genes are involved in
TNF
‐induced cell death in intestinal crypt Paneth cells, and since zinc has direct effects on the composition of the gut microbiota (such as several
Staphylococcus
species) and on
TNF
‐induced Paneth cell death, we postulate a new zinc‐related anti‐inflammatory mechanism. Zinc modulates the gut microbiota, causing less induction of
ISRE
/
IRF
genes in crypt cells, less
TNF
‐induced necroptosis in Paneth cells, and less fatal evasion of gut bacteria into the system.