Abstract:The low solubility and high volatility of perillyl alcohol (POH) compromise its bioavailability and potential use as chemotherapeutic drug. In this work, we have evaluated the anticancer activity of POH complexed with β-cyclodextrin (β-CD) using three complexation approaches. Molecular docking suggests the hydrogen-bond between POH and β-cyclodextrin in molar proportion was 1:1. Thermal analysis and Fourier-transform infrared spectroscopy (FTIR) confirmed that the POH was enclosed in the β-CD cavity. Also, the… Show more
“…The bidding affinities of CNT_RUT_HP_AA were calculated using the AutoDock Vina 1.1.2 [ 17 , 18 ]. CNT_RUT_HP_AA structure (molecular formula: C 176 H 222 O 60 ) was created using Discovery Studio, v20 (Accelrys, San Diego, CA, USA), and applied to Chem3D-MM2 protocol for energy minimization.…”
Multi-Walled Carbon Nanotubes (MWCNT) have been functionalized with rutin through three steps (i. reaction step; ii. purification step; iii. drying step) and their physicochemical properties investigated with respect to morphological structure, thermal analysis, Fourier Transform Infrared Spectroscopy (FTIR), and cytotoxicity. The molecular docking suggested the rutin-functionalized MWCNT occurred by hydrogen bonds, which was confirmed by FTIR assays, corroborating the results obtained by thermal analyses. A tubular shape, arranged in a three-dimensional structure, could be observed. Mild cytotoxicity observed in 3T3 fibroblasts suggested a dose–effect relationship after exposure. These findings suggest the formation of aggregates of filamentous structures on the cells favoring the cell penetration.
“…The bidding affinities of CNT_RUT_HP_AA were calculated using the AutoDock Vina 1.1.2 [ 17 , 18 ]. CNT_RUT_HP_AA structure (molecular formula: C 176 H 222 O 60 ) was created using Discovery Studio, v20 (Accelrys, San Diego, CA, USA), and applied to Chem3D-MM2 protocol for energy minimization.…”
Multi-Walled Carbon Nanotubes (MWCNT) have been functionalized with rutin through three steps (i. reaction step; ii. purification step; iii. drying step) and their physicochemical properties investigated with respect to morphological structure, thermal analysis, Fourier Transform Infrared Spectroscopy (FTIR), and cytotoxicity. The molecular docking suggested the rutin-functionalized MWCNT occurred by hydrogen bonds, which was confirmed by FTIR assays, corroborating the results obtained by thermal analyses. A tubular shape, arranged in a three-dimensional structure, could be observed. Mild cytotoxicity observed in 3T3 fibroblasts suggested a dose–effect relationship after exposure. These findings suggest the formation of aggregates of filamentous structures on the cells favoring the cell penetration.
“…The prediction was validated in an in vitro assay where the cellular uptake of these nanoparticles was eight-fold higher in comparison to conventional systems in FR-positive tumour cells via endocytosis. In another study, docking was used to predict the conformation of a POH/β-CD inclusion complex of which the predicted most stable structure (1:1 molar ratio) was selected for formulation and in vitro and in vivo studies [25].…”
Drug targeting is a progressive area of research with folate receptor alpha (FRα) receiving significant attention as a biological marker in cancer drug delivery. The binding affinity of folic acid (FA) to the FRα active site provides a basis for recognition of FRα. In this study, FA was conjugated to beta-cyclodextrin (βCD) and subjected to in silico analysis (molecular docking and molecular dynamics (MD) simulation (100 ns)) to investigate the affinity and stability for the conjugated system compared to unconjugated and apo systems (ligand free). Docking studies revealed that the conjugated FA bound into the active site of FRα with a docking score (free binding energy < −15 kcal/mol), with a similar binding pose to that of unconjugated FA. Subsequent analyses from molecular dynamics (MD) simulations, root mean square deviation (RMSD), root mean square fluctuation (RMSF), and radius of gyration (Rg) demonstrated that FA and FA–βCDs created more dynamically stable systems with FRα than the apo-FRα system. All systems reached equilibrium with stable RMSD values ranging from 1.9–2.4 Å and the average residual fluctuation values of the FRα backbone atoms for all residues (except for terminal residues ARG8, THR9, THR214, and LEU215) were less than 2.1 Å with a consistent Rg value of around 16.8 Å throughout the MD simulation time (0–100 ns). The conjugation with βCD improved the stability and decreased the mobility of all the residues (except residues 149–151) compared to FA–FRα and apo-FRα systems. Further analysis of H-bonds, binding free energy (MM-PBSA), and per residue decomposition energy revealed that besides APS81, residues HIS20, TRP102, HIS135, TRP138, TRP140, and TRP171 were shown to have more favourable energy contributions in the holo systems than in the apo-FRα system, and these residues might have a direct role in increasing the stability of holo systems.
“…Molecular docking gives us effective information about bond simulations between molecules. 27 In order to comprehend the orientation, conformation, and interaction of the drug/guest molecule within the cavity of β-CD, molecular modeling is a constructive computational technique. 28 …”
Our present study
intended to investigate the encapsulation of
DL-AGT within the lipophilic cavity of a β-CD molecule. The
consequential inclusion system was characterized by UV–visible
spectroscopy and
1
H NMR, PXRD, SEM, and FT-IR studies.
Molecular docking was performed for the inclusion complex to discover
the most proper orientation, and it was seen that the drug DL-AGT
fits into the cavity of β-CD in a 1:1 ratio, which was also
confirmed from the Job plot. Furthermore, a comparison was done on
the basis of cell viability between the drug and its inclusion complex.
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