This paper develops a method for optimizing the construction phases for rail transit line extension projects with the objective of maximizing the net present worth and examines the economic feasibility of such extension projects under various financial constraints (i.e., unconstrained, revenue-constrained, and budget-constrained cases). A Simulated Annealing algorithm is used for solving this problem. Rail transit projects may be divided into several phases due to budget limits or demand growth that justifies different sections at different times. A mathematical model is developed to optimize these phases for a simple, one-route rail transit system, running from a Central Business District (CBD) to a suburban area. Some interesting results indicate that the economic feasibility of links with low demand is affected by the completion time of those links and their demand growth rate after their implementation. Sensitivity analysis explores the effects of interest rates on optimized results (i.e., construction phases and objective value). With further development, such a method should be useful to transportation planners and decision-makers in optimizing construction phases for rail transit line extension projects.