“…Eight sets of primers were used for amplification and sequencing of the entire genome of the viral DNA. They were designed from published sequence data of EV 71 BrCr strain: primer pair I, 5Ј-TTAAAA-CAGCTGTGGGTTG [nucleotide (nt) [1][2][3][4][5][6][7][8][9][10][11][12][13][14][15][16][17][18][19] as the sense strand primer, 5Ј-GAACTTCCAGTACCACCCC (nt 1196 -1178) as the antisense strand primer; primer pair II, 5Ј-TATGGTGAGTGGCCTTCATACTG (nt 1053-75) as the sense strand primer, 5Ј-AGTGAGTGTTAC-TGATCCATGGT (nt 2241-2218) as the antisense strand primer; primer pair III, 5Ј-TACACACCACCAG-GAGGCCCCT (nt 2115-2126) as the sense strand primer, 5Ј-ACCAGCATAATTTGGGTTGGCT (nt 3282-3261) as the antisense strand primer; primer pair IV, 5Ј-TTCCATTCATGT -CACCTGCGA (nt 2964 -2984) as the sense strand primer, 5Ј-GAAATGGGCGAG -GTATGACACA (nt 4291-4269) as the antisense strand primer; primer pair V, 5ЈATTAGTAAGTTTATT-TATTGGCT(nt 4149 -4171) as the sense strand primer, 5Ј-ACAACTGCAACCACAGTTGCTAT(nt 5271-5249) as the antisense strand primer; primer pair VI, 5Ј-TCCATTGCTACTGTGGTAGCAGT (nt 5253-5275) as the sense strand primer, 5Ј-TAGCAGGCTTCTTCC-ATTCTCAT (nt 6241-6219) as the antisense strand primer; primer pair VII, 5Ј-ACTAAGCTGGAA-CCCAGTG (nt 6003-6021) as the sense strand primer, 5Ј-ATAACAAATTTACCCCCACC (nt 7396 -7377) as the antisense strand primer; primer pair VIII, 5Ј-GAGAAATTTGTGAGTACAA (nt 7227-7245) as the sense strand primer, 5Ј-AGCAGTGGTAACAACGC-AGAG-TACT(30)CN (nt 7408 -7342). RT-PCR was carried out by RT-PCR beads (Pharmacia Biotech, Sweden).…”