Allele frequency of CODIS 13 in Indonesian population

Untoro, Evi; Atmadja, Djaja Surya; Pu, Chang En; Wu, Fang Chi

doi:10.1016/j.legalmed.2009.01.007

Cited by 20 publications

(17 citation statements)

References 4 publications

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“…Based on the highest allele frequencies, the results of this study had differences from similar studies on Indonesian population (Untoro 2009), populations of Java, Sumatra, Sulawesi (Linace 2001). The difference may be due to differ-ence in samples where the research was on one population and traced up to 3 generations above/below and between samples were not mutually related.…”

Section: Discussioncontrasting

confidence: 88%

CODIS STR LOCI (CSF1PO, THOI, TPOX, vWA) GENETIC VARIATION ANALYSIS IN MADURESE

Yudianto¹,

Sosiawan²,

Margaret³

2017

FMI

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Endogamy continues to occur among the Madurese people in rural areas of the island of Madura, especially those areas of the smallest islands around the mainland of Madura. Endogamy as seen from a genetic standpoint will increase the frequency of homozygote genotypes. With regard to genetic variations, STRs of nuclear DNA and polymorphisms in mtDNA are frequently examined. Genetic variations in human undergo an evolutionary process through the accumulation of changes in DNA sequence, i.e. through the process of nucleotide substitutions that evolves in number with the directional development of lineage. So far, the genetic variations among the populations in Madura Island have not been known. The present study was an observational analytical research with the purpose of determining the genetic variations in STR CODIS in the populations of Madura Island. Results indicated that, based on loci alelle: CSF1PO, THOI, TPOX, and vWA, there was homozygote genotypes. The allele variations is not specific for Madurese ethnic but this variations may represent married model in Madurese ethnic. According to Mustama (2007), a gene pool is not only a collection of genes but a dynamic system organized and containing the past history of a population. Any genetic information has certain historical, anthropological and statistical aspects necessitating an interdisciplinary coordination and collaboration.

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Section: Discussioncontrasting

confidence: 88%

CODIS STR LOCI (CSF1PO, THOI, TPOX, vWA) GENETIC VARIATION ANALYSIS IN MADURESE

Yudianto¹,

Sosiawan²,

Margaret³

2017

FMI

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“…KEYWORDS: forensic science, Cannabis, marijuana, NMI01, FTA cards, databasing, DNA, dispensary Collection cards have been used in human DNA collection, processing, and long-term storage in forensic laboratories for many years (1)(2)(3). They have found extensive use in convicted felon databasing because DNA applied to a collection card is protected from degradation by the antimicrobial and antifungal properties of the paper, can be stored at room temperature in a space efficient manner, and processing is automatable (4)(5)(6).…”

mentioning

confidence: 99%

Field Testing of Collection Cards for Cannabis sativa Samples With a Single Hexanucleotide DNA Marker*,†

Allgeier

Hemenway

Shirley

et al. 2011

Journal of Forensic Sciences

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The validity and feasibility of using DNA collection cards in the field for preservation and analysis of Cannabis sativa genotypes were investigated using a highly specific hexanucleotide marker. Collection cards were submitted to the National Marijuana Initiative, which selectively trained and managed the collection of specific types of samples from a variety of participating agencies. Samples collected at seizure sites included fresh marijuana leaf samples, dried "dispensary" samples, U.S. border seizures, and hashish. Using a standardized PCR kit with custom-labeled oligonucleotide primers specific to marijuana, collection cards produced eight genotypes and 13 different alleles, extremely low baselines, and no cross-reactivity with control plant species. Results were produced from all sample types with the exception of hashish. Plant DNA collection cards represent an easily implementable method for the genetic identification and relatedness of C. sativa street and grow site-seized samples with applications for databasing and market disruption.

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“…The study also considered 15 STR analyzed among Indonesians and Bangladeshis with exception of FES and F13B (Dobashi et al 2005) whereby all agreed with Hardy-Weinberg equilibrium to be used in the two populations with the highest discrimination at D21S11 among Indonesians as to D18S51 among Southern Egyptians (Omran, Rutty, and Jobling 2009). However, the Indonesian population is highly dispersed on CODIS STR though specific and different compared to other Asians (Untoro et al 2009). The specificity necessitates the use of verified STR of choice to attain the inquiry.…”

Section: Resultsmentioning

confidence: 99%

Full-sibling allelic frequency and sharing among Madurese: STR technique by 12 locus and the sex-typing amelogenin gene

Sosiawan

Yudianto

Furqoni

et al. 2019

Egypt J Forensic Sci

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Background: Sibling relation over chosen STR loci and localized database is yet to be developed in Indonesia like into many other countries despite the demand of varied ethnic population, catastrophes and civil conflict that call forensic preparedness. The targeted application includes human genomic typing and profile, kinship/sibship relation, forensic applications, individual identification, and or claneology tracing. Consequently, this study devotes on sibship in assessing and establishing preferable STR loci and allelic sharing extent amongst Madurese full sibling. Materials and methods: One hundred blood samples were used to examine sibling relationship among 50 full siblings (25 pairs) assigned from a total of 100 individuals of 25 Madura families. Sibship relation was done by STR technique profile by 12 loci (CSF1PO, F13B, FES, TH01, TPOX, vWA, D5S818, D7S820, D8S1179, D13S317, D16S539, and D18S51) and a sex-typing amelogenin gene locus Results: From 300 observations (25 pairs of full-sibling × 12 loci) of genotyped STR allele, of allele sharing, has found 4 STR loci: FES, CSF1PO, F13, and D8S1179 with high-shared allelic frequency in two alleles sharing among twelve STR loci by 52%, 52%, 44%, and 40% respectively. As for the four main loci of full sibling with one allele sharing, i.e, D7S820, D18S51, vWA, and THO1, have a sequence of percentages from large to small as follows: 76%, 76%, 72%, and 60%, respectively. Furthermore, STR locus VWA expressed null shared allele in 24 allele-sharing category. Likewise, F13 and FES both typed null allele in zero allele-sharing category among these full sibling Conclusion: Through the use of 12 autosomal STR loci, the study has signified the strength of 2 shared allele evidence by 51.2% in establishing sibship and recommend D7S820, VWA, TH01, and D18S51 as STR loci of choice when typing sibling among Madurese.

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Allele frequency of CODIS 13 in Indonesian population

Cited by 20 publications

References 4 publications

CODIS STR LOCI (CSF1PO, THOI, TPOX, vWA) GENETIC VARIATION ANALYSIS IN MADURESE

CODIS STR LOCI (CSF1PO, THOI, TPOX, vWA) GENETIC VARIATION ANALYSIS IN MADURESE

Field Testing of Collection Cards for Cannabis sativa Samples With a Single Hexanucleotide DNA Marker*,†

Full-sibling allelic frequency and sharing among Madurese: STR technique by 12 locus and the sex-typing amelogenin gene

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