Moore SR, Guedes MM, Costa TB, Vallance J, Maier EA, Betz KJ, Aihara E, Mahe MM, Lima AA, Oriá RB, Shroyer NF. Glutamine and alanyl-glutamine promote crypt expansion and mTOR signaling in murine enteroids. Am J Physiol Gastrointest Liver Physiol 308: G831-G839, 2015. First published March 19, 2015; doi:10.1152/ajpgi.00422.2014.-L-Glutamine (Gln) is a key metabolic fuel for intestinal epithelial cell proliferation and survival and may be conditionally essential for gut homeostasis during catabolic states. We show that L-alanyl-L-glutamine (Ala-Gln), a stable Gln dipeptide, protects mice against jejunal crypt depletion in the setting of dietary protein and fat deficiency. Separately, we show that murine crypt cultures (enteroids) derived from the jejunum require Gln or Ala-Gln for maximal expansion. Once expanded, enteroids deprived of Gln display a gradual atrophy of cryptlike domains, with decreased epithelial proliferation, but stable proportions of Paneth and goblet cell differentiation, at 24 h. Replenishment of enteroid medium with Gln selectively activates mammalian target of rapamycin (mTOR) signaling pathways, rescues proliferation, and promotes crypt regeneration. Gln deprivation beyond 48 h leads to destabilization of enteroids but persistence of EGFP-Lgr5-positive intestinal stem cells with the capacity to regenerate enteroids upon Gln rescue. Collectively, these findings indicate that Gln deprivation induces a reversible quiescence of intestinal stem cells and provides new insights into nutritional regulation of intestinal epithelial homeostasis. intestinal organoids; L-glutamine; L-alanyl-L-glutamine; ERK; mammalian target of rapamycin IMPORTANT QUESTIONS regarding the maintenance of gastrointestinal (GI) epithelial homeostasis by the intestinal stem cells (ISCs) residing within the crypts of Lieberkühn are 1) how decisions about cellular growth, differentiation, and death are made and 2) how nutritional status and specific nutrients influence ISC dynamics (8,11, 28). Food provides a key stimulus for preserving the growth and normal crypt-villus architecture of the GI epithelium (19). Hence, atrophy of the GI mucosa is a common gut manifestation of both undernutrition and exclusive parenteral nutrition in humans and laboratory animals (24).Several gut trophic nutrients, including select amino acids, have been shown to promote GI epithelial homeostasis and barrier function in human and animal models of disease (3, 29). Among the amino acids with purported gut trophic effects, L-glutamine (Gln) continues to be a topic of keen interest, both as an important fuel for enterocytes and, more controversially, as a "conditionally essential" nutrient for GI epithelial homeostasis during severe illness (26). Despite several advances in understanding mechanisms of Gln in the gut (9), specific effects of Gln on ISC activation and differentiation have yet to be elucidated. This gap in knowledge is due, in part, to the long and elusive search for bona fide markers of ISCs. Thus the identification of a definitive m...