Agilicoccus flavus gen. nov., sp. nov., a novel member of the family Dermatophilaceae isolated from the Pearl River

Yin, Lingzi; Liu, Ze-Tao; Li, Jialing; Wang, Pandeng; Dong, Lei; Duan, Li; Luo, Xiaoqing; Fang, Bao‐Zhu; Li, Wenjun

doi:10.1099/ijsem.0.005076

Cited by 15 publications

(4 citation statements)

References 39 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…After extraction, the whole-cell hydrolysed sugar and the diamino acid of the peptidoglycan were analysed according to the HPLC methods described by Hasegawa et al . [39].…”

Section: Methodsmentioning

confidence: 99%

Chelativorans salis sp. nov., a slightly halophilic bacterium isolated from an enrichment system with saline lake sediment

Gao,

She,

Liu

et al. 2024

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

A Gram-stain-negative, non-motile, and slightly halophilic alphaproteobacterium, designated strain EGI FJ00035T, was isolated from enrichment sediment samples of a saline lake in Xinjiang Uygur Autonomous Region, PR China. The taxonomic position of the isolate was determined using the polyphasic taxonomic and phylogenomic analyses. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that strain EGI FJ00035T formed a distinct clade with ‘Chelativorans alearense’ UJN715 and ‘Chelativorans xinjiangense’ lm93 with sequence similarities of 98.44 and 98.22 %, respectively, while sharing less than 96.7 % with other valid type strains. The novel isolate could be distinguished from other species of the genus Chelativorans by its distinct phenotypic, physiological, and genotypic characteristics. Optimal growth of strain EGI FJ00035T occurred on marine agar 2216 at pH 7.0 and 30 °C. The major respiratory quinone was Q-10, while the major fatty acids (>5 %) were C19 : 0 cyclo ω8c, summed feature 8 (C17 : 1 ω6c and/or C17 : 1 ω7c), C16 : 0, C18 : 0, and iso-C17 : 0. The detected polar lipids included diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, unidentified aminophospholipids, unidentified glycolipids, and an unidentified lipid. Based on its genome sequence, the G+C content of strain EGI FJ00035T was 63.2 mol%. The average nucleotide identity, average amino acid identity, and digital DNA–DNA hybridization values of strain EGI FJ00035T against related members of the genus Chelativorans were below the thresholds for delineation of a novel species. According our polyphasic taxonomic data, strain EGI FJ00035T represents a new species of the genus Chelativorans, for which the name Chelativorans salis sp. nov. is proposed. The type strain of the proposed novel isolate is EGI FJ00035T (=KCTC 92251T=CGMCC 1.19480T).

show abstract

“…After extraction, the whole-cell hydrolysed sugar and the diamino acid of the peptidoglycan were analysed according to the HPLC methods described by Hasegawa et al . [39].…”

Section: Methodsmentioning

confidence: 99%

Chelativorans salis sp. nov., a slightly halophilic bacterium isolated from an enrichment system with saline lake sediment

Gao,

She,

Liu

et al. 2024

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

show abstract

“…The respiratory quinones were extracted and purified from lyophilized cells as described by Collins et al and Minnikin et al [40,41], and the extracts were analysed by using HPLC [42,43]. After extraction, the polar lipids were analysed by the two-dimension TLC method on silica gel G 60 plates (Merck) as described previously [44,45]. After extraction, the whole-cell hydrolysed sugars and the diamino acid of the peptidoglycan were analysed according to the HPLC methods described by Hasegawa et al [46].…”

mentioning

confidence: 99%

Paracoccus salsus sp. nov., a novel slightly halophilic bacterium isolated from saline lake sediment

Gao

Fang

Liu

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

A Gram-stain-negative, non-motile, slightly halophilic and non-endospore-forming alphaproteobacterium, designated strain EGI L200073T, was isolated from saline lake sediment sampled in Xinjiang Uygur Autonomous Region, China. The taxonomic position of the isolate was determined using the polyphasic taxonomic analysis and phylogenomic analysis. Phylogenetic analysis based on 16S rRNA gene sequence similarities indicated that strain EGI L200073T formed a distinct clade with Paracoccus seriniphilus DSM 14827T and shared sequence identity of 98.56 %. The novel isolate could be distinguished from other species of the genus Paracoccus by its distinct phenotypic, physiological and genotypic characteristics. Optimal growth of strain EGI L200073T occurred on marine agar 2216 at pH 8.0 and 30 °C. The major respiratory quinone was Q-10, while the major fatty acids (>10%) were summed feature 8 (C17 : 1 ω6c and/or C17 : 1 ω7c) and C18 : 0. The detected polar lipids included diphosphatidylglycerol, phosphatidylcholine and phosphatidylglycerol. Based on the genome sequence of strain EGI L200073T, the G+C content of the novel isolate was 65.7 mol%. The average nucleotide identity, amino acid identity and digital DNA–DNA hybridization values of strain EGI L200073T against related members in the genus Paracoccus were below the cut-off points proposed for delineation of a novel species. According our polyphasic taxonomic data, strain EGI L200073T represents a new species of the genus Paracoccus , for which the name Paracoccus salsus sp. nov. is proposed. The type strain of the proposed novel isolate is EGI L200073T (=KCTC 92045T=CGMCC 1.19242T).

show abstract

“…The respiratory quinones were extracted and purified from lyophilized cells as previously described, and the extracts were analysed by using HPLC [25][26][27][28]. After extraction, the polar lipids were analysed by the two-dimensional TLC method on silica gel G 60 plates (Merck) as described previously [29,30]. After extraction, the whole cell hydrolysed sugar, and the diamino acid of the peptidoglycan were analysed according to the HPLC methods described by Hasegawa et al [31].…”

mentioning

confidence: 99%

Rhabdothermincola salaria sp. nov., a novel actinobacterium isolated from a saline lake sediment

Gao

Fang

Liu

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

An actinobacterium, designated strain EGI L10124T, was isolated from saline lake sediment collected in Xinjiang province, PR China. The taxonomic position of the isolate was determined based on polyphasic taxonomic and phylogenomic analyses. Phylogenetic analysis and 16S rRNA gene sequence similarities indicated that strain EGI L10124T formed a distinct clade with Rhabdothermincola sediminis SYSU G02662T, with a shared sequence identity of 95.2 %. The novel isolate could be distinguished from species in the genus Rhabdothermincola by its distinct phenotypic, physiological and genotypic characteristics. The cells of strain EGI L10124T were aerobic, Gram-stain-positive and short rod-shaped. Optimal growth conditions of strain EGI L10124T on marine agar 2216 were registered at pH 8.0 at 37 °C. In addition, meso-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan. The major respiratory quinone was MK-9 (H8), while the major fatty acids were iso-C16 : 0, C17 : 0 and C16 : 0. The polar lipids included diphosphatidylglycerol, phosphatidylinositol mannoside and phosphatidylinositol. Based on the genome sequence of strain EGI L10124T, it appears that the G+C content of the novel isolate was 71.8 mol%. According to our data, strain EGI L10124T represents a new species of the genus Rhabdothermincola , for which the name Rhabdothermincola salaria sp. nov. is proposed. The type strain of the proposed novel isolate is EGI L10124T (=CGMCC 1.19113T=KCTC 49679T).

show abstract

Agilicoccus flavus gen. nov., sp. nov., a novel member of the family Dermatophilaceae isolated from the Pearl River

Cited by 15 publications

References 39 publications

Chelativorans salis sp. nov., a slightly halophilic bacterium isolated from an enrichment system with saline lake sediment

Chelativorans salis sp. nov., a slightly halophilic bacterium isolated from an enrichment system with saline lake sediment

Paracoccus salsus sp. nov., a novel slightly halophilic bacterium isolated from saline lake sediment

Rhabdothermincola salaria sp. nov., a novel actinobacterium isolated from a saline lake sediment

Contact Info

Product

Resources

About