Leukocyte type core 2 1,6-N-acetylglucosaminyltransferase (C2GnT-L) is a key enzyme in the biosynthesis of branched O-glycans. It is an inverting, metal ion-independent family 14 glycosyltransferase that catalyzes the formation of the core 2 O-glycan (Gal1-3[GlcNAc1-6]GalNAc-O-Ser/Thr) from its donor and acceptor substrates, UDP-GlcNAc and the core 1 O-glycan (Gal1-3GalNAc-O-Ser/Thr), respectively. Reported here are the x-ray crystal structures of murine C2GnT-L in the absence and presence of the acceptor substrate Gal1-3GalNAc at 2.0 and 2.7 Å resolution, respectively. C2GnT-L was found to possess the GT-A fold; however, it lacks the characteristic metal ion binding DXD motif. The Gal1-3GalNAc complex defines the determinants of acceptor substrate binding and shows that Glu-320 corresponds to the structurally conserved catalytic base found in other inverting GT-A fold glycosyltransferases. Comparison of the C2GnT-L structure with that of other GT-A fold glycosyltransferases further suggests that Arg-378 and Lys-401 serve to electrostatically stabilize the nucleoside disphosphate leaving group, a role normally played by metal ion in GT-A structures. The use of basic amino acid side chains in this way is strikingly similar to that seen in a number of metal ion-independent GT-B fold glycosyltransferases and suggests a convergence of catalytic mechanism shared by both GT-A and GT-B fold glycosyltransferases.3 is a cis-medial Golgi resident glycosyltransferase that catalyzes the conversion of the core 1 O-glycan to that of the core 2 structure (1, 2). Core 2 O-glycans have been shown to be key ligands in selectin-mediated lymphocyte homing and leukocyte rolling; lymphocyte L-selectins bind to endothelial cell O-glycans containing 6-sulfo sialyl Lewis x on core 2 and extended core 1 structures, whereas neutrophils expressing sialyl Lewis x on core 2 O-glycans bind to E-and P-selectins on endothelial cells (3-5). C2GnT-L is also of considerable interest in the study of tumor metastasis given that its expression is highly correlated with tumor progression in a number of cancers. It is overexpressed in colorectal, lung, and prostate cancer, and recent work has shown that transfection of C2GnT-L into a prostate cancer cell line leads to increased tumor size in an experimental tumor model (6 -8).C2GnT-L is an inverting N-acetylglucosaminyltransferase belonging to family GT-14 (9). It transfers N-acetylglucosamine (GlcNAc), in 1,6 linkage, from UDP-GlcNAc to Gal1-3Gal-NAc-O-Ser/Thr (core 1) to generate Gal1-3[GlcNAc1-6]GalNAc-O-Ser/Thr (core 2). C2GnT-L (leukocyte-type or C2GnT-I) along with C2GnT-M (mucin-type or C2GnT-II) (10, 11) and C2GnT-T (thymus-type or C2GnT-III) (12) are the three 1,6 N-acetylglucosaminyltransferases involved in the biosynthesis of core 2 branched O-glycans. The three enzymes differ in tissue distribution, and the mammalian homologues show 40 -50% sequence similarity with each other. Divalent metal ions, which have been shown to be essential for catalytic activity in many glycosyltransf...