Abstract:Turning a linear sugar into its cyclized
form is an essential skill
in biochemistry. A simple paper model is described that can be used
by any student to transform a carbohydrate in its Fischer projection
and correctly cyclize it into its Haworth form. The model can also
be used to illustrate several key aspects of the Fischer projection
of which many students are typically unaware.
“…The author was inspired to develop papercraft models by Kondinski’s reports. Paper crafts have been reported that allow students to learn about the structures of sugars and fullerenes. , The papercraft models are inexpensive and easy to build because they are made from paper and simple materials. For molecular cage models, the coordination bonds are represented by clips, which, while it increases the work process and difficulty of the craft, also increases the fun of assembling them.…”
This report outlines the creation of papercraft models designed to elucidate the rational design and characteristics of metal−organic cages tailored for first-year nonchemistry majors. Metal−organic cages are advanced materials formed by self-assembling metal ions and bridging ligands into cage-like structures. Notable examples include [(en)Pd] 6 (4TPT) 412+ (1) and [(en)Pd] 6 (3TPT) 4 12+ (2) [where en = ethylenediamine, 4TPT = 2,4,6-tri(4-pyridyl)-1,3,5-triazine, and 3TPT = 2,4,6-tri(3-pyridyl)-1,3,5-triazine], exhibiting isomeric properties. Compound 1 features a hollow octahedral structure, while compound 2 adopts a bowl-shaped form, allowing for the encapsulation of small molecules within its cavity. Using cardboard imprinted with molecular structures and supplemented with paper clips, students actively engaged in fabricating papercraft models of compounds 1 and 2. This hands-on approach deepened their comprehension of the rational design principles and small-molecule encapsulation mechanisms inherent in these compounds while reinforcing their understanding of coordination bonds and isomerism fundamentals.
“…The author was inspired to develop papercraft models by Kondinski’s reports. Paper crafts have been reported that allow students to learn about the structures of sugars and fullerenes. , The papercraft models are inexpensive and easy to build because they are made from paper and simple materials. For molecular cage models, the coordination bonds are represented by clips, which, while it increases the work process and difficulty of the craft, also increases the fun of assembling them.…”
This report outlines the creation of papercraft models designed to elucidate the rational design and characteristics of metal−organic cages tailored for first-year nonchemistry majors. Metal−organic cages are advanced materials formed by self-assembling metal ions and bridging ligands into cage-like structures. Notable examples include [(en)Pd] 6 (4TPT) 412+ (1) and [(en)Pd] 6 (3TPT) 4 12+ (2) [where en = ethylenediamine, 4TPT = 2,4,6-tri(4-pyridyl)-1,3,5-triazine, and 3TPT = 2,4,6-tri(3-pyridyl)-1,3,5-triazine], exhibiting isomeric properties. Compound 1 features a hollow octahedral structure, while compound 2 adopts a bowl-shaped form, allowing for the encapsulation of small molecules within its cavity. Using cardboard imprinted with molecular structures and supplemented with paper clips, students actively engaged in fabricating papercraft models of compounds 1 and 2. This hands-on approach deepened their comprehension of the rational design principles and small-molecule encapsulation mechanisms inherent in these compounds while reinforcing their understanding of coordination bonds and isomerism fundamentals.
“…Typically, carbohydrates are presented in biochemistry courses as chemical structures-often Fischer or Haworth projections. Despite the popular use of these representations, it is notoriously difficult for students to extract stereochemical information from them [43], which suggests that 3D molecular representations should be more widely used in instruction.…”
Section: Rq1: Which Assessment Items Exhibit Statistically Significan...mentioning
While visual literacy has been identified as a foundational skill in life science education, there are many challenges in teaching and assessing biomolecular visualization skills. Among these are the lack of consensus about what constitutes competence and limited understanding of student and instructor perceptions of visual literacy tasks. In this study, we administered a set of biomolecular visualization assessments, developed as part of the BioMolViz project, to both students and instructors at multiple institutions and compared their perceptions of task difficulty. We then analyzed our findings using a mixed-methods approach. Quantitative analysis was used to answer the following research questions: (1) Which assessment items exhibit statistically significant disparities or agreements in perceptions of difficulty between instructors and students? (2) Do these perceptions persist when controlling for race/ethnicity and gender? and (3) How does student perception of difficulty relate to performance? Qualitative analysis of open-ended comments was used to identify predominant themes related to visual problem solving. The results show that perceptions of difficulty significantly differ between students and instructors and that students’ performance is a significant predictor of their perception of difficulty. Overall, this study underscores the need to incorporate deliberate instruction in visualization into undergraduate life science curricula to improve student ability in this area. Accordingly, we offer recommendations to promote visual literacy skills in the classroom.
“…Stereochemistry is the branch of chemistry that studies the three-dimensional (3D) structure of organic compounds and the impact of spatial arrangements of atoms on the stability and reactivity of compounds. , Different molecular representations, such as the zigzag structure (Natta projection), Newman projection, and Fischer projection, have been developed to depict the three-dimensional (3D) structure of organic compounds. Converting one molecular representation into another is among the main learning objectives of an introductory organic chemistry course. , Mastering the skill of converting one molecular representation into another requires understanding the 3D structure of each form, performing the necessary operations to complete the transformation, and then executing it. − Three-dimensional visualization of molecules is essential for chemistry-major students; however, for nonmajors or students with a certain level of aphantasia, this can be difficult and overwhelming. ,− Using model kits or computer software can help in 3D visualization; − however, such techniques are only reliable in classroom activities involving small molecules and are impractical for large molecules or during exams. , Despite the importance of this topic, interconverting the different molecular representations has received little attention in undergraduate organic chemistry textbooks, , and the development of simple, practical, and student-friendly techniques remains necessary. Several methods have been reported for the interconversion of the different molecular representations. ,− However, only a few have been reported about interconverting zigzag structures and Fischer projections. ,− The traditional approaches for completing such interconversions that involve drawing the fully eclipsed conformation, using the “absolute configuration assignment” method, or 3D visualization are usually time-consuming and impractical, especially for compounds with multiple chiral centers. − In this context, Mandal described a method for converting the 3D bond-line structure of a chiral center into a Fischer projection to facilitate absolute configuration assignment .…”
Different molecular representations are usually used
to depict
the three-dimensional (3D) structure of organic compounds. Mastering
the skill of interconverting one form into another is essential for
students to ensure success in organic chemistry. The traditional and
recently developed methods for completing such interconversions that
rely on 3D visualization of 2D paper (screen) structures, absolute
configuration assignments, or multistep drawings that require 3D visualization
are often time-consuming and difficult, especially for students with
3D visualization difficulties or a certain level of aphantasia, thus
turning organic chemistry into a hurdle in their academic pathway.
Given the importance of this topic and its impact on students’
understanding of organic chemistry, the Arrow-Rotation-Method (ARM) has been developed to interconvert zigzag structures and Fischer
projections in a few simple steps that require only 2D visualization.
A quantitative approach was used on a group of students enrolled in
an introductory organic chemistry course to evaluate the time efficiency
and usefulness of the new method. The results indicated that ARM significantly
improved students’ performance in completing the various interconversions
compared to the traditional methods and proved to be more student-friendly,
time-efficient, and accurate, especially for compounds with multiple
chiral centers. ARM was also successfully used to sketch the structure
of complex compounds with multiple chiral centers upon conformational
change.
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