The self-assembly
of molecularly interlocked molecules
offers new
opportunities for creating bioactive molecules for applications in
medicine. Cooperative capture synthesis of heterorotaxanes in water
is an attractive methodology for developing multifunctional supramolecular
imaging agents or drugs, but derivatizing the rotaxane scaffold with
biologically active vectors like peptides and proteins, or reporter
probers like radioactive metal ion complexes and fluorophores, requires
the installation of reactive functional groups. Here, we explored
the chemical scope of β-cyclodextrin (β-CD) derivatization
on the cucurbit[6]uril (CB[6])-mediated cooperative capture synthesis
of hetero[4]rotaxanes with the objective of identifying which reactive
groups can be used for further functionalization without compromising
the efficiency of rotaxane synthesis. Nine β-CD derivatives
featuring an electrophilic leaving group (tosylate), aliphatic amines,
a carboxylic acid, aliphatic azides, anilines, and aryl isothiocyanate
were evaluated in the synthesis of hetero[4]rotaxanes. Experimental
measurements on the kinetics of rotaxane synthesis were combined with
detailed computational studies using the density functional theory
to elucidate the mechanistic pathways and rate determining step in
the cooperative capture process. Computational studies on the structure
and bonding also revealed why intermolecular interactions between
the β-CD and CB[6] macrocycles improve the rate and efficiency
of rotaxane formation through cooperative capture. Understanding the
mechanistic details and synthetic scope will facilitate broader access
to functionalized hetero[4]rotaxanes for applications in biomedicine
and beyond.