Recent advances in the experimental and theoretical approaches have made it possible to design and synthesize small clusters and nanoparticles with desirable properties using atom-byatom substitution. One of them is the well-defined superatomic cluster Co 6 S 8 L 6 + (L = PEt 3 ). Herein, we present a synergistic study, involving theory and experiments, of the incorporation of the firstrow transition metal atoms (Sc, Ti, V, Cr, Mn, Fe, Co. Ni, Cu, and Zn) into the core of this cluster. We use the density functional theory to examine the effect of each of the substituted heteroatoms on the stability, electronic structure, and magnetic properties of the doped clusters. Experimentally, we use high-resolution electrospray ionization mass spectrometry and ion mobility spectrometry to examine metal incorporation into the cluster core and its effect on its structure. Theoretical calculations show that, except for Cu and Zn, it is energetically possible to replace a Co atom in the core with all 3d-transition metal atoms. However, with our synthetic method, only Mn, Ni, and Fe incorporation has been achieved experimentally. We propose that the incorporation of other metal atoms, while thermodynamically favorable, is hindered by side reactions. The high probability of formation of stable Co