1994
DOI: 10.1093/nar/22.7.1138
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A nuclear factor that binds purine-rich, single-stranded oligonucleotides derived from S1-sensitive elements upstream of the CFTR gene and the MUC1 gene

Abstract: We have identified two regions of non-random purine/pyrimidine strand asymmetry that were nearly identical in sequence in the 5' flanking (promoter) regions of the human cystic fibrosis transmembrane conductance regulator (CFTR) gene and the human MUC1 gene. These regions contain perfect mirror repeat elements, a sequence motif previously found to be associated with the formation of H-DNA conformations. In this report we demonstrate that a single-stranded non-B DNA conformation exists at low pH in supercoiled … Show more

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Cited by 35 publications
(43 citation statements)
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“…Cellular Fractionation-Preparation of membrane/cytoplasmic extracts and nuclear extracts was as described previously (33)(34)(35). Panc-1 and S2-013 cells were cultured on 225-cm 2 flasks to 90% confluence.…”
Section: Methodsmentioning
confidence: 99%
“…Cellular Fractionation-Preparation of membrane/cytoplasmic extracts and nuclear extracts was as described previously (33)(34)(35). Panc-1 and S2-013 cells were cultured on 225-cm 2 flasks to 90% confluence.…”
Section: Methodsmentioning
confidence: 99%
“…Nuclear extracts were prepared from cell lines and DNase I footprinting was performed as descibed previously [20,35].…”
Section: Dnase I Footprinting In Vitromentioning
confidence: 99%
“…As shown for other sequences (including our previous studies of shorter R/Y sequences from the CFTR and MUC1 promoters), such elements may adopt non-B DNA structures of unknown significance under certain in vitro conditions (11)(12)(13). The R/Y sequences near CFTR and MUC1 are similar to that near MT-I in that they display imperfect mirror symmetry consistent with the potential for isomerization to imperfect triplex (H-DNA) structures (12,13). The MT-I R/Y sequence contains no single plane of extensive mirror symmetry, but contains several imperfect purine/pyrimidine mirror repeats (PMRs) within it.…”
Section: Introductionmentioning
confidence: 57%
“…In previous experiments we have employed low resolution S1 nuclease sensitivity to demonstrate unusual structures in DNA sequences cloned from the CFTR and MUC1 gene promoters (12,13). These studies demonstrated that supercoiled (but not linearized) plasmids containing the PMR from these gene promoters displayed S1 nuclease sensitivity mapping in the region of the PMR.…”
Section: Resultsmentioning
confidence: 99%