Proteolytic activity was detected, using a sensitive radial diffusion plate assay, in the plasma membrane fractions of corn (Zea mays L.) roots and from roots of several other plant species. The proteases could be effectively inhibited in corn with phenylmethane sulfonyl fluoride or chymostatin. Protease activity of oat roots, however, was not significantly reduced by these inhibitors. The results of diffusion plate assay were confirmed with the less sensitive azocasein assay using crude cell homogenates. Chymostatin (2,12). This endogenous protease activity can also lead to artifacts during SDS-PAGE, such as a general smearing of the protein staining pattern on the gel, a loss of high mol wt polypeptides, and subtle shifts in electrophoretic mobility of specific polypeptides (1,8,12,18).Proteolytic enzymes are classified into two broad categories; the exopeptidases, or peptidases, which cleave peptide bonds at the N or C terminal positions producing very subtle modifications of the protein that are difficult to detect during protein purification, and the endopeptidases, or proteinases, which cleave internal peptide bonds producing dramatic effects on native protein structure and activity that are readily detected during protein purification (3,13). In this paper, we will use the term protease to refer to this later category of proteolytic enzyme.Based on catalytic mechanism, proteases can be separated into various classes which are usually distinguished by the use of specific inhibitors, rather than by activity with a particular substrate. Chemical inhibitors covalently modify a critical amino acid in the active site of the protease. For example, PMSF3 alkylates a reactive serine of the serine type of protease (13). However, chemical inhibitors are not always specific, and PMSF will also react with sulfhydryl proteases or with an important sulthydryl on the enzyme being purified. Competitive inhibitors compete at the active site of the protease and are usually very specific inhibitors (17). The microbial product, chymostatin, is an example of a competitive type of protease inhibitor. There are several approaches that can be taken to reduce protease activity during plant cell fractionation ( 12). One of the simplest approaches is to choose a tissue that has a low protease content. Because this is usually not possible, fractionation must be conducted under conditions which limit protease activity. This includes adjusting pH above or below the optimum for protease activity, lowering temperature to near 0WC, controlling the concentration of divalent cation activators of proteases, keeping the total time for fractionation as short as possible, removal of proteases from the homogenate by, for example, affinity chromatography, and/or adding an effective inhibitor of proteases. The addition of an inhibitor is by far the simplest and most effective way to control the activity of proteases. However, the effectiveness of a particular inhibitor in reducing protease activity will depend on the type of protease pr...