Advances of analytical methods and emerging microfluidic tools have made it possible to investigate biological processes in living organisms in detail and reach sensitivities sufficient for single-cell analysis. The term "single-cell analysis" typically refers to the elucidation of cell-to-cell differences in large cell populations, such as size, morphology, growth rate, or molecular content like the composition of lipids, proteins, metabolites, DNA/RNA, etc. Many different techniques have been developed to address the effects of cell heterogeneities.
1-4As far as we know today, heterogeneities appear in all cell populations (bacteria, yeast, and mammalian cells) and even within cell lineages, where all cells are derived from the very same mother cell. Besides the fundamental research questions (such as, why are cells different and how does the difference affect cell physiology and fate?), single-cell analysis has practical applications in many research fields.5 As will be covered in this Review, the examples include cancer biology, stem cells and regenerative medicine, microbiology and pathogenesis, neuroscience, immunology, and many more.The biggest challenges of single-cell analysis arise from the small size of cells, the tiny absolute number of target molecules, the large number of different molecules present in a wide range of concentrations and, last but not least, the complexity imposed by many related intra-or intercellular dynamic processes. To follow these dynamic processes at the single cell level, due to the response to environmental changes or drugs, cell differentiation, or metabolic changes, methods with a high time resolution and high throughput are required in addition to high sensitivity and specificity. Quantification with highly precise and accurate read-out is essential to ensure that the revealed heterogeneities indeed originate from the cell population and are not methodical artifacts.To date, various chemical and physical techniques are applied in the field of single-cell analysis. They typically address selected aspects of the single cells and may be complementary to each other. In the following, we focus on new developments in the fields iD ORCID Petra S.