A genetic linkage map of the Japanese flounder, Paralichthys olivaceus

Coimbra, Maria Raquel Moura; Kobayashi, Kazunobu; Koretsugu, S; Hasegawa, Osamu; Ohara, Eriko; Ozaki, Akiyuki; Sakamoto, Takashi; Naruse, Katsutoshi; Okamoto, Nobuaki

doi:10.1016/s0044-8486(02)00353-8

Cited by 159 publications

(112 citation statements)

References 34 publications

Supporting

Mentioning

104

Contrasting

Unclassified

Order By: Relevance

“…Differences in recombination rates between sexes have been identified in many species; for example, humans (Dib et al 1996), dogs (Wong et al 2010), crocodiles (Miles et al 2009), and fish. In fish, recombination rates have generally been reported to be higher in females compared to males ranging from 3.25:1 in rainbow trout (Sakamoto et al 2000), 7.4:1 in the Japanese flounder (Coimbra et al 2003), 1.37:1 in Atlantic salmon (Lien et al 2011), 2.2:1 in the silver carp (Guo et al 2013), 2:1 in the Atlantic halibut (Reid et al 2007), 1.5:1 in the kelp grouper ), 1.03:1 in the orange-spotted grouper (You et al 2013), and 1.19:1 in the white grouper (Dor et al 2014). In this study, the recombination rate ratio between females and males was 1.12:1, which was lower than previous reports.…”

Section: Discussionmentioning

confidence: 99%

Detection of Growth-Related Quantitative Trait Loci and High-Resolution Genetic Linkage Maps Using Simple Sequence Repeat Markers in the Kelp Grouper (Epinephelus bruneus)

et al. 2016

Self Cite

View full text Add to dashboard Cite

To initiate breeding programs for kelp grouper (Epinephelus bruneus), the establishment of genetic linkage maps becomes essential accompanied by the search for quantitative trait loci that may be utilized in selection programs. We constructed a high-resolution genetic linkage map using 1055 simple sequence repeat (SSR) markers in an F 1 family. Genome-wide and chromosome-wide significances of growth-related quantitative trait loci (QTLs) (body weight (BW) and total length (TL)) were detected using nonparametric mapping, Kruskal-Wallis (K-W) analysis, simple interval mapping (IM) and a permutation test (PT). Two stages and two families of fish were used to confirm the QTL regions. Ultimately, 714 SSR markers were matched that evenly covered the 24 linkage groups. In total, 509 and 512 markers were localized to the female and male maps, respectively. The genome lengths were approximately 1475.95 and 1370.39 cM and covered 84.68 and 83.21 % of the genome, with an average interval of 4.1 and 4.0 cM, in females and males, respectively. One major QTL affecting BW and TL was found on linkage group EBR 17F that identified for 1 % of the genomewide significance and accounted for 14.6-18.9 and 14.7-18.5 % of the phenotypic variance, and several putative QTL with 5 % chromosome-wide significance were detected on eight linkage groups. Furthermore, the confirmed results of the regions harboring the major and putative QTLs showed consistent significant experiment-wide values of 1 and 5 % as well as a chromosome-wide value of 5 %. We identified growth-related QTLs that could be applied to find candidate genes for growth traits in further studies, and potentially useful in MAS breeding.

show abstract

Section: Discussionmentioning

confidence: 99%

Detection of Growth-Related Quantitative Trait Loci and High-Resolution Genetic Linkage Maps Using Simple Sequence Repeat Markers in the Kelp Grouper (Epinephelus bruneus)

et al. 2016

Self Cite

View full text Add to dashboard Cite

show abstract

“…Artificial chromosome set manipulation and subsequent sex-manipulation were performed in Japanese flounder, Paralichys olivaceus (Yamamoto, 1999). In addition, a project involving linkage mapping in Japanese flounder is in progress (Coinbra et al, 2003). (Purdom, 1972).…”

Section: Application Of Surrogate Propagation To Flatfish Aquaculturementioning

confidence: 99%

Developmental biotechnology for aquaculture, with special reference to surrogate production in teleost fishes

Yamaha

Saito

Goto-Kazeto

et al. 2007

Journal of Sea Research

View full text Add to dashboard Cite

The purpose of this review is to introduce surrogate production as a new technique for fish-seed production in aquaculture. Surrogate production in fish is a technique used to obtain the gametes of a certain genotype through the gonad of another genotype. It is achieved by inducing germ-line chimerism between different species during early development. Primordial germ cells (PGCs) are a key material of this technique to induce germ-line chimera. In several species, it has been reported that PGCs differentiated from the blastomeres inherited some maternally supplied mRNA located at the terminal regions of the early cleavage furrows. PGCs from donor species (or strains) are isolated and transplanted into host species to induce the germ-line chimera.Four methods for inducing germ-line chimera, namely, blastomere transplantation, blastoderm-graft transplantation, transplantation of PGC from the genital ridge and transplantation visualized PGC with GFP fluorescence, are described. Several problems preventing the successful induction of germ-line chimera in various fish species are mentioned. Surrogate production, however, has the possibility to allow efficient fish-seed production and effective breeding and transfer of biodiversity to an aquaculture strain.Conservation and efficient utilization of genetic resources will be achieved through surrogate production combined with the cryopreservation of PGCs.

show abstract

“…Due to their high variability, these genetic markers have been widely used in genetic mapping (Knapik et al, 1998;Shimoda et al, 1999;Coimbra et al, 2003) and population structure studies Primmer et al, 2006). However, one of the great impediments for the wider use of microsatellites is the need to isolate and characterize these markers via cloning and sequencing of genomic libraries for each species of interest (Angers and Bernatchez, 1997).…”

mentioning

confidence: 99%

Description of novel microsatellite loci in the Neotropical fish Prochilodus argenteus and cross-amplification in P. costatus and P. lineatus

et al. 2008

View full text Add to dashboard Cite

Prochilodus is one of the most important fish resources of South America, in addition to the important role it plays in nutrient cycling of Neotropical rivers. In the present study, we describe the isolation and characterization of nine novel microsatellite loci in Prochilodus argenteus. The number of alleles per polymorphic locus varied from 5 (Par76) to 21 (Par85), revealing a total of 116 alleles. The values of observed and expected heterozygosities ranged from 0.629 (Par69) to 0.926 (Par85 and Par86) and from 0.643 (Par66) to 0.931 (Par80), respectively. Furthermore, the ability of these and other previously described microsatellite markers to amplify orthologous loci was tested in two related species, Prochilodus costatus and Prochilodus lineatus. These loci will be useful for studies of population genetic structure in this group of fishes, and in aiding future genetic mapping studies of P. argenteus.Key words: cross-species amplification, enrichment libraries, microsatellite, Prochilodus. Family Prochilodontidae constitutes one of the most important fish resources of South America (Bayley and Petrere, 1989), in addition to its important role in nutrient cycling in Neotropical rivers (Flecker, 1996). Prochilodus comprises 49 nominal species of which only 13 species are valid (Castro and Vari, 2003). Among the species found in the São Francisco River basin, Prochilodus argenteus, popularly known as curimatã-pacu, forms a bulk of the subsistence fishery of the region, although numbers harvested have drastically declined in the last years (Sato and Godinho, 2004).Microsatellites are polymorphic DNA sequences containing short tandemly arranged repetitions (Tautz, 1989), distributed throughout the genome (Litt and Luty, 1989), and found in all prokaryotic and eukaryotic genomes studied until now (Zane et al., 2002). Due to their high variability, these genetic markers have been widely used in genetic mapping (Knapik et al., 1998;Shimoda et al., 1999;Coimbra et al., 2003) and population structure studies Primmer et al., 2006). However, one of the great impediments for the wider use of microsatellites is the need to isolate and characterize these markers via cloning and sequencing of genomic libraries for each species of interest (Angers and Bernatchez, 1997). Nevertheless, once the flanking sequences of microsatellite markers are known, a large number of individuals may be rapidly genotyped.Although the Neotropical ichthyofauna is the world's most diversified (Lowe-McConnel,1969;1987), microsatellite primers have been published only for Piaractus mesopotamicus (Calcagnotto et al., 2001), Astyanax fasciatus (Strecker, 2003), Arapaima gigas (Farias et al., 2003), Brycon opalinus (Barroso et al., 2003), Eigenmannia sp. (Moysés et al., 2005), Pseudoplatystoma corruscans (Revaldaves et al., 2005), Brycon hilarii (Sanches and Galetti, 2006) and Prochilodus costatus (Carvalho-Costa et al., 2006). The isolation and characterization of microsatellite loci has also been performed in P. argenteus, and thirteen loci ...

show abstract

A genetic linkage map of the Japanese flounder, Paralichthys olivaceus

Cited by 159 publications

References 34 publications

Detection of Growth-Related Quantitative Trait Loci and High-Resolution Genetic Linkage Maps Using Simple Sequence Repeat Markers in the Kelp Grouper (Epinephelus bruneus)

Detection of Growth-Related Quantitative Trait Loci and High-Resolution Genetic Linkage Maps Using Simple Sequence Repeat Markers in the Kelp Grouper (Epinephelus bruneus)

Developmental biotechnology for aquaculture, with special reference to surrogate production in teleost fishes

Description of novel microsatellite loci in the Neotropical fish Prochilodus argenteus and cross-amplification in P. costatus and P. lineatus

Contact Info

Product

Resources

About