2010
DOI: 10.1111/j.1365-2052.2009.02002.x
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A gene‐based SNP linkage map for pacific white shrimp, Litopenaeus vannamei

Abstract: Pacific white shrimp (Litopenaeus vannamei) are of particular economic importance to the global shrimp aquaculture industry. However, limited genomics information is available for the penaeid species. We utilized the limited public information available, mainly single nucleotide polymorphisms (SNPs) and expressed sequence tags, to discover markers for the construction of the first SNP genetic map for Pacific white shrimp. In total, 1344 putative SNPs were discovered, and out of 825 SNPs genotyped, 418 SNP mark… Show more

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Cited by 69 publications
(66 citation statements)
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“…Genetic linkage maps were constructed also for some other species important for aquaculture, as gilthead sea bream, Sparus aurata (Tsigenopoulos et al, 2014); Asian seabass, Lates calcarifer Sun et al, 2017); mandarin fish, Siniperca chuatsi ; turbot, Scophthalmus maximus (Wang et al, 2015b); Japanese flounder, Paralichthys olivaceus (Castaño-Sánchez et al, 2010;Shao et al, 2015); large yellow croaker, Larimichthys crocea (Ao et al, 2015); black tiger shrimp, Penaeus monodon (Baranski et al, 2014); Pacific white shrimp, L. annamei (Du et al, 2010); Pacific abalone, Haliotis discus hannai (Qi et al, 2010); South African abalone, Haliotis midae (Vervalle et al, 2013) and silver-lipped pearl oyster, Pinctada maxima (Jones et al, 2013). Linkage maps of commercial fish and shellfish have been listed in other review papers (Wenne et al, 2007;Yue, 2014;Abdelrahman et al, 2017).…”
Section: Linkage Mapsmentioning
confidence: 99%
“…Genetic linkage maps were constructed also for some other species important for aquaculture, as gilthead sea bream, Sparus aurata (Tsigenopoulos et al, 2014); Asian seabass, Lates calcarifer Sun et al, 2017); mandarin fish, Siniperca chuatsi ; turbot, Scophthalmus maximus (Wang et al, 2015b); Japanese flounder, Paralichthys olivaceus (Castaño-Sánchez et al, 2010;Shao et al, 2015); large yellow croaker, Larimichthys crocea (Ao et al, 2015); black tiger shrimp, Penaeus monodon (Baranski et al, 2014); Pacific white shrimp, L. annamei (Du et al, 2010); Pacific abalone, Haliotis discus hannai (Qi et al, 2010); South African abalone, Haliotis midae (Vervalle et al, 2013) and silver-lipped pearl oyster, Pinctada maxima (Jones et al, 2013). Linkage maps of commercial fish and shellfish have been listed in other review papers (Wenne et al, 2007;Yue, 2014;Abdelrahman et al, 2017).…”
Section: Linkage Mapsmentioning
confidence: 99%
“…Such progress included the development of molecular markers (Leu et al, 2011;Duan et al, 2013), generation of large-insert BAC libraries , construction of genetic and physical maps, and efforts for sequencing the entire genome of the penaeid shrimp (Shen et al, 2007;Du et al, 2010;You et al, 2010;Lin et al, 2012). These genomic resources made it possible to address the issues of disease resistance at the genome and transcriptome levels using various approaches such as microarrays (Zeng and Lu, 2009;Aoki et al, 2011).…”
Section: Introductionmentioning
confidence: 99%
“…vannamei consisted primarily of AFLP markers (Perez et al, 2004;Zhang et al, 2007), although several microsatellite markers were also included Garcia and Alcivar-warren, 2007). An SNP-based linkage map was recently generated (Du et al, 2010), but the coverage and density still need further improvements. The 13 100 potential SSR markers developed in this project represent an important resource for genetic mapping and will facilitate QTL mapping.…”
Section: Repetitive Sequences Analysismentioning
confidence: 99%
“…Comparative genomics can provide useful information about the architecture and functional organization of the genome, particularly for species without whole genome sequences (Du et al, 2010). The numbers of BESs mapped on D .…”
Section: Comparison Between Lvbess and Other Known Genomesmentioning
confidence: 99%