Isolated rat liver nuclear matrices have been partially separated by means of mild sonication into a matrix protein (matricin) fraction and a residual ribonucleoprotein (RNP) fraction . The initial matricin fraction is composed largely of protein (91 .1%) but also contains significant amounts of DNA (8.4%) . Reconstruction experiments indicate that this DNA is not the result of the artifactual binding of DNA to the matrix during the extraction procedures. Subsequent treatment with DNase I results in purified matricin composed of >99 .5% protein. SDS acrylamide gel electrophoresis of the matrix protein fibrils reveals only three bands: the primary matrix polypeptides of 62,000, 66,000, and 70,000 daltons. Electron microscopy demonstrates a diffuse reticulum with fibrils as thin as 30-50 A and the presence of 80-100-A globular structures . The residual RNP fraction is composed largely of protein (80 .1%) and RNA (19 .5%), with only traces of DNA (1 .I%) . Over 98% of the total matrix-associated RNA is recovered in this fraction . SDS acrylamide gel electrophoresis indicates an enrichment in both low and high molecular weight secondary matrix polypeptides, although the 60,000-70,000-dalton polypeptides are present in significant amounts as well . Ultrastructural analysis of the residual RNP fraction reveals distinct electron-dense-staining matrix particles (150-350 A) attached to a fibrous matricin network.By suitable extraction procedures, a proteinaceous nucleoskeletal matrix has been isolated from a variety of eukaryotic nuclei (4,6,7,9,10,19,28,30,31,54). The close similarity of the isolated matrix structures to in situ observed nuclear structures suggests that the isolated matrix is not an artifact of preparation (4,6,10). This is further supported by the cytological identification of an overall nuclear matrix structure in both fixed and unfixed whole cells (15,26,51). Moreover, structural alterations induced in the in situ matrix structure by actinomycin D are maintained in the J . CELL BIOLOGY