Aims To examine the rate of macular thickness loss using time-domain optical coherence tomography (OCT) in functionally progressing versus non-progressing eyes, determined by standard automated perimetry (SAP). Methods Glaucoma suspects (GS) and glaucomatous (G) eyes underwent SAP and OCT imaging every 6 months. Functional progression was determined using pointwise linear regression, defined as 2 contiguous locations losing Z1.0 dB/year at Po1.0% in the same hemifield. The annual rate of macular thickness loss was calculated from inner and outer regions of the macular map. Results 72 eyes (43 GS and 29G) with Z30 months of follow-up were enroled. Fourteen eyes demonstrated SAP progression. The annual rate of macular thickness loss (mm/year) in progressing eyes was faster (all Po0.05) than non-progressing eyes in temporal outer ( À 1.90±2.97 vs 0.33±2.77), nasal inner ( À 1.70±2.66 vs 0.14±2.76), superior inner ( À 2.15 ± 4.57 vs 0.51 ± 2.99), temporal inner quadrants ( À 2.58 ± 5.05 vs À 0.38 ± 2.34), and the average of inner macular quadrants ( À 1.84 ± 2.90 vs 0.03 ± 2.10). The rate of loss in the nasal inner (P ¼ 0.02) and temporal outer (P ¼ 0.02) macular regions was associated with optic disc haemorrhage. Conclusions Eyes with SAP progression have significantly greater rates of macular thickness loss consistent with glaucomatous retinal ganglion cell atrophy, as compared with non-progressing eyes.