Abstract:The priming effect in soil is proposed to be generated by two distinct mechanisms: 'stoichiometric decomposition' and/or 'nutrient mining' theories. Each mechanism has its own dynamics, involves its own microbial actors, and targets different soil organic matter (SOM) pools. The present study aims to evaluate how climatic parameters drive the intensity of each priming effect generation mechanism via the modification of soil microbial and physicochemical properties. Soils were sampled in the center of Madagasca… Show more
“…In another respect, our results show that the priming effect decreased with the decrease in microbial diversity. Again, this is not in agreement with the food web hypothesis since a decrease in macronutrient availability would, on the contrary, have increased the intensity of the PE due to stimulation of the nutrientmining mechanism (44,50,51) that has been demonstrated to take place in cases of nutrient depletion. Finally, the hypothesis of a decrease of nutrient availability is not in agreement with the decrease of the decomposition of lignin following the erosion of diversity previously reported in the context of the same experiment (16).…”
In soil, the link between microbial diversity and carbon transformations is challenged by the concept of functional redundancy. Here, we hypothesized that functional redundancy may decrease with increasing carbon source recalcitrance and that coupling of diversity with C cycling may change accordingly. We manipulated microbial diversity to examine how diversity decrease affects the decomposition of easily degradable (i.e., allochthonous plant residues) versus recalcitrant (i.e., autochthonous organic matter) C sources. We found that a decrease in microbial diversity (i) affected the decomposition of both autochthonous and allochthonous carbon sources, thereby reducing global CO emission by up to 40%, and (ii) shaped the source of CO emission toward preferential decomposition of most degradable C sources. Our results also revealed that the significance of the diversity effect increases with nutrient availability. Altogether, these findings show that C cycling in soil may be more vulnerable to microbial diversity changes than expected from previous studies, particularly in ecosystems exposed to nutrient inputs. Thus, concern about the preservation of microbial diversity may be highly relevant in the current global-change context assumed to impact soil biodiversity and the pulse inputs of plant residues and rhizodeposits into the soil. With hundreds of thousands of taxa per gram of soil, microbial diversity dominates soil biodiversity. While numerous studies have established that microbial communities respond rapidly to environmental changes, the relationship between microbial diversity and soil functioning remains controversial. Using a well-controlled laboratory approach, we provide empirical evidence that microbial diversity may be of high significance for organic matter decomposition, a major process on which rely many of the ecosystem services provided by the soil ecosystem. These new findings should be taken into account in future studies aimed at understanding and predicting the functional consequences of changes in microbial diversity on soil ecosystem services and carbon storage in soil.
“…In another respect, our results show that the priming effect decreased with the decrease in microbial diversity. Again, this is not in agreement with the food web hypothesis since a decrease in macronutrient availability would, on the contrary, have increased the intensity of the PE due to stimulation of the nutrientmining mechanism (44,50,51) that has been demonstrated to take place in cases of nutrient depletion. Finally, the hypothesis of a decrease of nutrient availability is not in agreement with the decrease of the decomposition of lignin following the erosion of diversity previously reported in the context of the same experiment (16).…”
In soil, the link between microbial diversity and carbon transformations is challenged by the concept of functional redundancy. Here, we hypothesized that functional redundancy may decrease with increasing carbon source recalcitrance and that coupling of diversity with C cycling may change accordingly. We manipulated microbial diversity to examine how diversity decrease affects the decomposition of easily degradable (i.e., allochthonous plant residues) versus recalcitrant (i.e., autochthonous organic matter) C sources. We found that a decrease in microbial diversity (i) affected the decomposition of both autochthonous and allochthonous carbon sources, thereby reducing global CO emission by up to 40%, and (ii) shaped the source of CO emission toward preferential decomposition of most degradable C sources. Our results also revealed that the significance of the diversity effect increases with nutrient availability. Altogether, these findings show that C cycling in soil may be more vulnerable to microbial diversity changes than expected from previous studies, particularly in ecosystems exposed to nutrient inputs. Thus, concern about the preservation of microbial diversity may be highly relevant in the current global-change context assumed to impact soil biodiversity and the pulse inputs of plant residues and rhizodeposits into the soil. With hundreds of thousands of taxa per gram of soil, microbial diversity dominates soil biodiversity. While numerous studies have established that microbial communities respond rapidly to environmental changes, the relationship between microbial diversity and soil functioning remains controversial. Using a well-controlled laboratory approach, we provide empirical evidence that microbial diversity may be of high significance for organic matter decomposition, a major process on which rely many of the ecosystem services provided by the soil ecosystem. These new findings should be taken into account in future studies aimed at understanding and predicting the functional consequences of changes in microbial diversity on soil ecosystem services and carbon storage in soil.
“…Pseudomonas species in Gammaproteobacteria, known to degrade a wide variety of organic compounds and generally associated with lignocellulose degradation (Cheng & Chang, 2011;Mohana, Shah, Divecha, & Madamwar, 2008), were the main C utilizers at Day 90. Some subgroups of Proteobacteria can decompose poorly decayed plant tissues, and so they are also able to survive in labile C-exhausted conditions at late decomposition stage (Razanamalala, Razafimbelo, Maron, Ranjard, & Chemidlin, 2018). Rime, Hartmann, Stierli, Anesio, and Frey (2016) studied the microbial community in response to increasing vegetation under various C sources and found different fungal taxa played roles in C decomposition.…”
Section: Bacterial Taxa-specific Associations With Rice Strawmentioning
Considering the close connection between soil microorganisms with carbon (C) cycling, the aim of this study was to identify the specific bacterial and fungal microbes that assimilate 13C from incorporated rice straw and explore their dynamics and characteristics during straw decomposition in paddy soil. Soil microcosms based on 12/13C‐labeled rice straw were incubated with the determination of CO2 production at 1, 3, 7, 14, 28, 56 and 90 days after straw incorporation. Meanwhile, the targeted soil bacterial and fungal communities were characterized using a DNA‐based stable isotope probing (DNA‐SIP) approach combined with Illumina MiSeq sequencing. Rice straw decomposed rapidly in the first 2 weeks, coupled with a large turnover of soil native organic matter. During this process, Actinobacteria including the orders Streptomycetales, Caternulisporales and Corynebacteriales dominated the community utilizing rice straw‐derived C with a succession from Streptomyces, to Kitasatospora, to Catenulispora. At Days 56 to 90, the dominant orders assimilating rice straw‐derived 13C were Micrococcales, Sphingobacteriia, Gammaproteobacteria from phyla Actinobacteria, Bacteroidetes and Proteobacteria, respectively. The fungal orders Onygenales, Capnodiales, Sordariales and Pleosporales showed stronger ability of 13C utilization at late decomposition stage. Taken together, along with stimulation of soil organic matter mineralization after rice straw addition, dynamics of 13C‐assimilating bacterial and fungal groups with various characteristics were identified.
“…Furthermore, the changes of prokaryotic and fungal community compositions owing to glucose addition may suggest that both prokaryotes and fungi may drive positive PEs in the studied lake sediment microcosms. Multiple previous studies have characterized bacterial roles in driving positive PEs (Mau et al, 2015;Morrissey et al, 2017;Razanamalala et al, 2017Razanamalala et al, , 2018. However, little attention has been given to the importance of fungi in positive PEs, especially in lake sediments (Fan et al, 2019;Fontaine et al, 2011).…”
Section: Microbial Drivers Of Positive Pe In the Studied Lake Microcosmsmentioning
confidence: 99%
“…Several studies pointed out that both stoichiometric decomposition and nutrient mining processes can co‐occur in one sample, and they are regulated by environmental factors (e.g., nutrient status and temperature) during positive PEs in soil ecosystems (Chen et al, 2014; Razanamalala et al, 2018). For example, the former process is favored at the condition of rich nutrients or low temperature, while the latter prefers the condition of nutrient limitation or high temperature (Chen et al, 2014; Razanamalala et al, 2017). However, little is known whether salinity, one type of environmental determinant, can affect PE generation processes.…”
Priming effects (PEs) and their associated microbial drivers are not well studied in lake sediments. Here, we investigated PEs and underlying potential microbial drivers in the sediments of lakes on the Qinghai‐Tibetan Plateau (QTP). Sediments were collected from three QTP lakes with different salinity, followed by microcosm construction and subsequent incubation at in situ temperature. The sediment microcosms were amended with 13C‐labeled glucose, on which PE intensities were evaluated in the incubations on Days 7 and 42. Positive PEs were observed in all the studied lake sediment microcosms. PE intensities exhibited significantly (p < 0.05) linear correlations with most of the measured physicochemical factors (e.g., salinity, sediment total nitrogen/phosphorus, and ratios of carbon:nitrogen), and such linear correlations were inverse for the early (i.e., on Day 7) and late (i.e., on Day 42) PEs. Prokaryotic and fungal community compositions significantly changed owing to glucose addition in the studied lake microcosms, suggesting that both prokaryotes and fungi may contribute to the observed PEs. Network analysis showed that the numbers of positive correlations between fungal taxa and other microorganisms increased with the enhancement of the late PE intensity, suggesting that fungi and associated co‐metabolisms may play key roles in late PEs in this study. Collectively, this study gives new insights into PE intensity and underlying microbial drivers of PE in lake sediments, and such knowledge is of great importance to understanding organic matter mineralization in lake ecosystems.
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