2015
DOI: 10.1186/s12864-015-1997-z
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Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani

Abstract: BackgroundDickeya solani is an emerging pathogen that causes soft rot and blackleg diseases in several crops including Solanum tuberosum, but little is known about its genomic diversity and evolution.ResultsWe combined Illumina and PacBio technologies to complete the genome sequence of D. solani strain 3337 that was used as a reference to compare with 19 other genomes (including that of the type strain IPO2222T) which were generated by Illumina technology. This population genomic analysis highlighted an unexpe… Show more

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Cited by 52 publications
(110 citation statements)
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“…All previously characterized D. solani strains indicated identical rep-PCR and PFGE profiles (Degefu et al 2013;Tsror (Lahkim) et al 2013;van der Wolf et al 2014;Potrykus et al 2016). However, the comparison of genome sequences of several D. solani strains indicated the existence of some differences within the studied strains caused probably by the horizontal gene transfer (Khayi et al 2015).…”
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confidence: 83%
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“…All previously characterized D. solani strains indicated identical rep-PCR and PFGE profiles (Degefu et al 2013;Tsror (Lahkim) et al 2013;van der Wolf et al 2014;Potrykus et al 2016). However, the comparison of genome sequences of several D. solani strains indicated the existence of some differences within the studied strains caused probably by the horizontal gene transfer (Khayi et al 2015).…”
mentioning
confidence: 83%
“…Studies show that these pathogens are able to induce diseases at the lower inoculum levels, produce more PCWDE and in addition possess an arsenal of T5SS/T6SS secreted proteins exhibiting more diverse functions than just destroying the plant cell-wall (Toth et al 2011;Garlant et al 2013;Pedron et al 2014;Khayi et al 2015;Potrykus et al 2016). …”
mentioning
confidence: 99%
“… D. solani species is genetically highly homogenous with 99.9% in genomic similarity (ANI value) [19, 20]. Between two given D. solani genomes, the number of variations (SNPs/InDels) is below one hundred.…”
Section: Insights From the Genome Sequencementioning
confidence: 99%
“…Between two given D. solani genomes, the number of variations (SNPs/InDels) is below one hundred. For example, when D. solani strain 3337 and D. solani strain IPO 2222 T were compared, 49 variations were observed: 15 were located out of CDS and 34 within CDS [19]. Only a few of D. solani genomes (strains RNS 07.7.3B, PPO 9019 and PPO 9134) exhibited a higher number of variations (>1000) because they acquired D. dianthicola genes by horizontal gene transfer [19].…”
Section: Insights From the Genome Sequencementioning
confidence: 99%
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