Functions of many African swine fever virus genes and multigene family members have not been yet understood. In particular, no virus genes directly associated with pig virulence have been identifed. Identifcation of such genes will enable preparation of deletion mutant ASF virus strains as well as development and testing of pilot safe vaccines based on the said virus strains. Comparative analysis of the virus biological characteristics and detection of differences in its genome structure affecting certain phenotypic features is a main method used for the virus basic pathogenicity and immunogenicity examination. The most interesting and effective approach to addressing this problem is an analysis of changes in the gene structure during ASF virus adaptation to replication in continuous cell culture. The said factors have made continuous cell culture-adapted variant ASF virus preparation necessary. Variant viruses with modifed biological features were prepared during adaptation of ASFV Odintsovo 02/14 isolate to replication in CV-1 cell culture. Lethality level was 16.7% when pigs were infected with adapted variant virus at 30th passage and survived animals became resistant to reinfection with homologous virulent ASFV Arm07 isolate. It should be noted that the virus passage in non-permissive cell culture up to 30 serial passages did not result in changes in its genotype; however, a large 3,000 bp deletion similar to that one in continuous Vero-cell culture-adapted BA71V strain genome appeared in right terminal variable region of the genome.

The novel coronavirus infection COVID-19, caused by the SARS-CoV-2, has triggered a pandemic, and has also been reported in animal populations – in farm minks, dogs and felines: domestic cats, lions and tigers. The susceptibility of some animal species to the SARS-CoV-2 has been proven by experimental infection. Serological methods are effectively used to detect the infection in animals. Currently, methods such as neutralization test, immunofluorescence assay and enzyme-linked immunoassay are used to detect antibodies to coronaviruses. Thanks to these studies, a test kit was developed based on an indirect enzyme-linked immunoassay to detect the SARS-CoV-2 antibodies in sera of susceptible animals. The use of a purified concentrated inactivated virus as an antigen allows the detection of antibodies to various SARS-CoV-2 immunodominant proteins (S and N). The reaction conditions were optimized, and a positive-negative threshold was established by testing of 154 negative sera from animals of six species (ferrets, minks, foxes, arctic foxes, cats and dogs). The method reproducibility analysis showed that the average value of the variation coefficient did not exceed 7%, which is an acceptable value. The specificity and sensitivity of the neutralization test, when testing 30 sera from ferrets was 100 and 92.6%, respectively. The high diagnostic sensitivity and specificity shown by testing of 50 serum samples from minks, foxes, cats and dogs with different immune status, allow us to recommend the developed test kit for screening and monitoring tests and post-vaccination immunity control.

The paper presents results of avian influenza epidemiological monitoring in the Republic of Crimea in 2019–2020. The attention was focused on the study of water basins of the Azov and Black Seas, the Sivash Lagoon and freshwater lakes in the Feodosia Urban Okrug, Leninsky, Sovetsky, Nizhnegorsky, Chernomorsky and Saksky Raions to detect the avian influenza virus circulation. Examination of the above mentioned areas showed that some freshwater reservoirs became shallow and dry, and aquatic vegetation degraded. The natural biotope analysis conducted in 2019 and 2020 showed a decreased number of semiaquatic wild birds. The pathological material was sampled from semiaquatic and migratory wild birds, as well as from poultry kept in poultry farms and backyards. The collected samples were tested using real-time RT-PCR. In 2019, the AIV type A (H9) genome was detected in one fecal sample taken from wild birds near Kuchuk-Adzhigol Lake in Feodosia Urban Okrug. The AIV type A (H5) genome was detected in 2020 during laboratory testing of pathological material taken from the remains of a mute swan within the shoreline of a freshwater lake near the Ermakovo settlement of the Dzhankoysky Raion. The genetic analysis was performed in the FGBI “ARRIAH” (Vladimir), and the N8 subtype neuraminidase of the influenza virus isolate was determined. The comparative genetic analysis of 258 bp nucleic acid sequences of the AIV H gene fragment showed that the identified isolate belongs to the Asian genetic lineage of highly pathogenic AIV subtype H5 (clade 2.3.4.4) associated with the epidemic spread in Asia, Europe, the Middle East and Africa in 2016–2020.

The paper presents data on the study of genetic characteristics of the infl uenza virus A/chicken/ Chelyabinsk/30/2019 H9N2 isolated from pathological material (chicken internal organs) in February 2019 and received from the poultry farm in the Chelyabinsk Oblast. The H9N2 subtype of the isolated virus was identifi ed based on virological analysis. Sequencing of the hemagglutinin gene segment revealed that the amino acid sequence at the cleavage site was RSSR/GLF, which is characteristic of a low virulent avian infl uenza virus. Phylogenetic analysis of the obtained nucleotide sequences of the hemagglutinin gene fragment (1–1539 bp open reading frame) showed that the A/chicken/Chelyabinsk/30/2019 H9N2 isolate belongs to the G1 genetic group of the low virulent infl uenza virus A/H9, the representatives of which are widely spread in the Middle Eastern and Central Asian countries. The complete nucleotide genome sequence of the studied pathogen was determined. The comparative analysis of all genomic segments using the GenBank database revealed a close relationship (over 99%) between the A/chicken/Chelyabinsk/30/2019 H9N2 virus and the A/H9 infl uenza virus isolates circulating in Israel in 2006–2012. According to the analysis of the predicted amino acid sequence of the studied isolate, the positions of some molecular markers that determine the biological properties of the virus have been identifi ed. Most amino acid positions of hemagglutinin (according to H3 subtype sequence numbering) suggest affi nity for the ACA2-3Gal-receptors of avian epithelial cells. Amino acid substitutions were detected at the site within the receptor-binding domain as compared to the A/H9N2 infl uenza virus isolates obtained in Russia in 2018. The primary structure of the A/chicken/Chelyabinsk/30/2019 H9N2 isolate demonstrates a very high level of genetic similarity to the infl uenza virus isolate A/chicken/ Israel/215/2007 H9N2 used as a vaccine strain.

Avian infectious bronchitis is one of the most common viral infections causing enormous economic losses in the global poultry industry. Due to the lack of mechanisms to correct errors during genome replication, the virus can quickly mutate and generate new strains. This is facilitated by widespread use of live vaccines, simultaneous circulation of field viruses belonging to different serotypes in one flock and rapid spread of the virus. Previous studies of avian infectious bronchitis virus strains and isolates identified in the Russian Federation poultry farms showed that 50% of samples tested positive for the 4-91, D274, H-120, Ma5 vaccine strains, and the other half of samples tested positive for the field viruses belonging to eight GI genetic lineages, while the G1-19 (QX) lineage was dominant. The paper presents identification and genotyping results of the avian infectious bronchitis virus in one of the poultry farms in the Saratov Oblast (the Russian Federation) in 2018–2019. The samples of internal organs and blood, as well as oropharyngeal and cloacal swabs were taken from chicks and layers of different ages in the parent and replacement flocks. The vaccine strain, GI-19 field isolates and variant isolates that do not belong to any of the known genetic lineages were detected. Analysis of test results within a two-year period showed that it is important to study samples taken from birds of different ages. The virus undergoes modification and adaptation inducing new genetic forms by infecting several poultry generations, due to which the heterogeneity of the virus population is ob­served not only in the poultry farm as a whole or in a separate department, but also within one organism. The identified isolates showed tropism for the tissues of intestine, reproductive organs, and, in rare cases, trachea and lungs. The data obtained indicate that, despite the vaccination used, a genetically diverse population of the infectious bronchitis virus circulates in the poultry farm, while the infection may not manifest itself at an early age, but may affect the flock productivity in the future due to pathological changes in the reproductive organs of laying chickens.