Pleistocene glacial oscillations and associated tectonic processes are believed to have influenced the historical abundances and distribution of organisms in the Asia Northwest Pacific (ANP). Accumulating evidence indicates that factors shaping tempospatial population dynamics and distribution patterns of marine taxa vary with biogeographical latitude, pelagic behaviour and oceanographic regimes. To detect what kinds of historical and contemporary factors affected genetic connectivity, phylogeographic profiles of littoral macroalga Sargassum horneri in the ANP were analysed based on mitochondrial (Cox3) and chloroplast (rbcL) data sets. Five distinct clades were recovered. A strong signature of biogeographical structure was revealed (Φ(CT) = 0.487, P < 0.0001) derived from remarkable differentiation in clade distribution, as clade I is restricted to Chinese marginal seas (Yellow-Bohai Sea, East China Sea and South China Sea), whereas clades II-V are discontinuously scattered around the main Islands of Japan. Furthermore, two secondary contact regions were identified along the south Japan-Pacific coastline. This significant differentiation between the two basins may reflect historical glacial isolation in the northwestern Pacific, which is congruent with the estimates of clade divergence and demographic expansion during the late Quaternary low sea levels. Analysis of molecular variance and the population-pair statistic F(ST) also revealed significant genetic structural differences between Chinese marginal seas and the Japanese basin. This exceptional phylogeographic architecture in S. horneri, initially shaped by historical geographic isolation during the late Pleistocene ice age and physical biogeographical barriers, can be complicated by oceanographic regimes (ocean surface currents) and relocating behaviour such as oceanic drifting.
Globally, China has the largest scale of kelp cultivation and production operations. However, its kelp aquaculture industry is suffering from declining germplasm diversity, degradation of agronomic traits, the presence of polluted environments, changing ocean conditions and increasing anthropological interference. This review covers two of the most commercially important kelp species in China, viz. Saccharina japonica and Undaria pinnatifida. It summarizes the history of their cultivation, production, economic and ecological benefits, their breeding programmes (e.g. inter-and intra-specific hybridization and marker-assisted selection) and efforts towards population genetic diversity and conservation. The article focuses on three significant challenges, for example genetic crosscontamination between the wild and farmed kelp populations, ocean warming and ocean acidification. Accordingly, we outline the steps required to provide several intervention measures, for example (i) collection and preservation of wild and cultivated kelp germplasm; (ii) selection of suitable cultivation sites under changing environmental conditions; (iii) developing stress-resistant cultivars; and finally, (iv) adoption of innovative cultivation models. The review concludes with genome-based, designs for molecular breeding and calls for the establishment of an East Asian Kelp Consortium (EAKC). Collectively, the Chinese kelp industry could provide beneficial goods and services, for example bioenergy to fine chemicals and environmental benefits, such as carbon capture, pH amelioration and provision of habitat for many other marine species of commercial value. The strategies proposed in this article thus have the potential to not only improve but also reinvigorate the kelp industry in China and nearby Japan and Korea, in the context of both environmental health and economic benefits.
Aim Oceanic currents are among the most pervasive hydrodynamic features in shaping community dynamics, population connectivity and phylogeographical structure of intertidal species. Here, we test whether population structure and biogeographical gradients of genetic diversity in the brown alga Sargassum thunbergii are correlated with oceanic currents in the north-west Pacific (NWP).Location North-west Pacific (25.07°N-43.36°N).Methods Nuclear internal transcribed spacer-2 and mitochondrial cox3 sequences were obtained from 835 and 810 individuals of S. thunbergii respectively. Parsimony networks and phylogenetic trees (maximum parsimony and Bayesian inference) were constructed to evaluate phylogeographical structure. Pairwise F ST estimates and analyses of molecular variance (AMOVA) at various hierarchical levels (latitude, longitude, marine provinces, biogeographical basins and zoogeographical zones) were conducted to elucidate population genetic differentiation. migrate software was used to estimate the number of migrants between adjacent populations.Results Several lines of evidence indicate that S. thunbergii is characterized by shallow population structure. Geographical distances do not correlate with population pairwise genetic differentiations. The corridor/stepping-stone model-based coalescent analyses reveal high levels of asymmetric gene flow among S. thunbergii populations, with the numbers of migrants largely corresponding to the directions of oceanic current systems in the NWP. Genetic signatures also indicate that Jeju Island, Korea might act as a transition zone for dispersal of S. thunbergii in the NWP driven by the Kuroshio Current, thus facilitating subsequent transportation northward into the Sea of Japan and the Yellow-Bohai Sea.Main conclusions Population genetic homogeneity in S. thunbergii was mainly structured by oceanic currents rather than palaeoclimatic events. Our study illustrates an important phylogeographical case of how coastal hydrodynamic factors contributed to population connectivity and geographical shifts of genetic diversity for marine organisms without a pelagic stage.
A major goal of phylogeographic analysis using molecular markers is to understand the ecological and historical variables that influence genetic diversity within a species. Here, we used sequences of the mitochondrial Cox1 gene and nuclear internal transcribed spacer to reconstruct its phylogeography and demographic history of the intertidal red seaweed Chondrus ocellatus over most of its geographical range in the Northwest Pacific. We found three deeply separated lineages A, B and C, which diverged from one another in the early Pliocene-late Miocene (c. 4.5-7.7 Ma). The remarkably deep divergences, both within and between lineages, appear to have resulted from ancient isolations, accelerated by random drift and limited genetic exchange between regions. The disjunct distributions of lineages A and C along the coasts of Japan may reflect divergence during isolation in scattered refugia. The distribution of lineage B, from the South China Sea to the Korean Peninsula, appears to reflect postglacial recolonizations of coastal habitats. These three lineages do not coincide with the three documented morphological formae in C. ocellatus, suggesting that additional cryptic species may exist in this taxon. Our study illustrates the interaction of environmental variability and demographic processes in producing lineage diversification in an intertidal seaweed and highlights the importance of phylogeographic approaches for discovering cryptic marine biodiversity.
Abstract:Monitoring front dynamics is essential for studying the ocean's physical and biogeochemical processes. However, the diurnal displacement of fronts remains unclear because of limited in situ observations. Using the hourly satellite imageries from the Geostationary Ocean Color Imager (GOCI) with a spatial resolution of 500 m, we investigated the diurnal displacement of turbidity fronts in both the northern Jiangsu shoal water (NJSW) and the southwestern Korean coastal water (SKCW) in the Yellow Sea (YS). The hourly turbidity fronts were retrieved from the GOCI-derived total suspended matter using the entropy-based algorithm. The results showed that the entropy-based algorithm could provide fine structure and clearly temporal evolution of turbidity fronts. Moreover, the diurnal displacement of turbidity fronts in NJSW can be up to 10.3 km in response to the onshore-offshore movements of tidal currents, much larger than it is in SKCW (around 4.7 km). The discrepancy between NJSW and SKCW are mainly caused by tidal current direction relative to the coastlines. Our results revealed the significant diurnal displacement of turbidity fronts, and highlighted the feasibility of using geostationary ocean color remote sensing technique to monitor the short-term frontal variability, which may contribute to understanding of the sediment dynamics and the coupling physical-biogeochemical processes.
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