Water permeability of the plasma membrane plays an important role in making optimal cryopreservation protocols for different types of cells. To quantify water permeability effectively, automated cell volume segmentation during freezing is necessary. Unfortunately, there exists so far no efficient and accurate segmentation method to handle this kind of image processing task gracefully. The existence of extracellular ice and variable background present significant challenges for most traditional segmentation algorithms. In this paper, we propose a novel approach to reliably extract cells from the extracellular ice, which attaches to or surrounds cells. Our method operates on temporal image sequences and is composed of two steps. First, for each image from the sequence, a greedy search strategy is employed to track approximate locations of cells in motion. Second, we utilize a localized competitive active contour model to obtain the contour of each cell. Based on the first step's result, the initial contour for level set evolution can be determined appropriately, thus considerably easing the pain of initialization for an active contour model. Experimental results demonstrate that the proposed method is efficient and effective in segmenting cells during freezing.

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Reconstruction of a continuous surface of two-dimensional manifold from its raw, discrete point cloud observation is a long-standing problem in computer vision and graphics research. The problem is technically ill-posed, and becomes more difficult considering that various sensing imperfections would appear in the point clouds obtained by practical depth scanning. In literature, a rich set of methods has been proposed, and reviews of existing methods are also provided. However, existing reviews are short of thorough investigations on a common benchmark. The present paper aims to review and benchmark existing methods in the new era of deep learning surface reconstruction. To this end, we contribute a large-scale benchmarking dataset consisting of both synthetic and real-scanned data; the benchmark includes object-and scene-level surfaces and takes into account various sensing imperfections that are commonly encountered in practical depth scanning. We conduct thorough empirical studies by comparing existing methods on the constructed benchmark, and pay special attention on robustness of existing methods against various scanning imperfections; we also study how different methods generalize in terms of reconstructing complex surface shapes. Our studies help identify the best conditions under which different methods work, and suggest some empirical findings. For example, while deep learning methods are increasingly popular in the research community, our systematic studies suggest that, surprisingly, a few classical methods perform even better in terms of both robustness and generalization; our studies also suggest that the practical challenges of misalignment of point sets from multi-view scanning, missing of surface points, and point outliers remain unsolved by all the existing surface reconstruction methods. We expect that the benchmark and our studies would be valuable both for practitioners and as a guidance for new innovations in future research. We make the benchmark publicly accessible at https://Gorilla-Lab-SCUT.github.io/SurfaceReconstructionBenchmark.

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