The reproductive biology of albacore tuna, Thunnus alalunga, in the western Indian Ocean was examined through analysis of the sex ratio, spawning season, length-at-maturity (L50), spawning frequency and fecundity. From 2013 to 2015, a total of 923 female and 867 male albacore were sampled. A bias in sex ratio was found in favor of females with fork length (LF) < 100 cm. Using histological analyses and gonadosomatic index, spawning was found to occur between 10°S and 30°S, mainly to the east of Madagascar from October to January. Large females contributed more to reproduction through their longer spawning period compared to small individuals. The L50 (mean ± standard error) of female albacore was estimated at 85.3 ± 0.7 cm LF. Albacore spawn on average every 2.2 days within the spawning region and spawning months, from November to January. Batch fecundity ranged between 0.26 and 2.09 million oocytes and the relative batch fecundity (mean ± standard deviation) was estimated at 53.4 ± 23.2 oocytes g-1 of somatic-gutted weight. The study provides new information on the reproductive development and classification of albacore in the western Indian Ocean. The reproductive parameters will reduce uncertainty in current stock assessment models which will eventually assist the fishery to be sustainable for future generations.

Lipid composition in the reproductive and somatic tissues were investigated for female albacore tuna, Thunnus alalunga, in the western Indian Ocean, between latitude 18–21°S and longitude 56–60°E, from January 2014 to March 2015. Highest total lipids (TL) were found in the gonads of spawning-capable females (SCP) (mainly phospholipids, PL, triacylglycerols, TAG and wax esters, WE) and in the liver of females in the late regressing and regenerating ovary phases (mainly TAG, PL and sterols, ST). Muscle TL was low but exhibited high inter-individual variability. Correlations between gonadosomatic and hepatosomatic indices with TL and the lipid classes in albacore gonads and liver describes a pattern of reallocation of energy from the liver to the gonads during SCP. Female albacore were also observed to pursue foraging activities even during this period. Therefore, female albacore can be considered as a capital-income breeder relying mostly on stored lipids before the onset of reproduction and to a lesser extent on energy derived from concurrent feeding during the spawning season. Overall, the three examined tissues had similar general fatty acid profiles with the dominance of 22:6ω3 (docosahexaenoic acid, DHA), 16:0, 18:0 and 18:1ω9. The proportions of fatty acids varied with maturity stage and ovary lobe, with the smaller lobe having significantly higher proportions of essential fatty acids, as well as 16:0 and 18:1n9, compared to the larger one. Our results provide new information on the life-history and energy allocation strategy of albacore which will assist fisheries managers.

In this study we investigated the trophic ecology of albacore tuna in the western Indian Ocean and adjacent Atlantic waters based on stomach content analysis using a reconstituted length and weight of prey approach. From 686 non-empty stomachs collected between 2001 and 2015 across three biogeographic provinces, we describe the diet composition of albacore tuna, analyse its feeding habits and investigate the structure and diversity of mid-trophic-level communities. Epipelagic fish were found to be the principal prey by number and reconstituted weight; cephalopods were the second important prey group. Small organisms prevailed in the diet of albacore tuna, with predation on juvenile fish commonplace. Albacore tuna exhibits a flexible, opportunistic feeding strategy, from ram filter feeding on abundant schooling prey to visual predation on large individuals. Prey species richness varied highly across the region. Oligotrophic conditions within the subtropical gyre of the Indian Ocean generated the most diverse mid-trophic-level communities, with less diverse communities occurring in productive areas. Albacore tuna occupies a similar trophic niche throughout the global ocean, foraging on the same prey families and even species. This study indicates overall temporal stability of the Indian Ocean and south-east Atlantic ecosystems where principal prey species remain unchanged over decades.

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Lipid and fatty acid datasets are commonly used to assess the nutritional composition of organisms, trophic ecology, and ecosystem dynamics. Lipids and their fatty acid constituents are essential nutrients to all forms of life because they contribute to biological processes such as energy flow and metabolism. Assessment of total lipids in tissues of organisms provides information on energy allocation and life‐history strategies and can be an indicator of nutritional condition. The analysis of an organism's fatty acids is a widely used technique for assessing nutrient and energy transfer, and dietary interactions in food webs. Although there have been many published regional studies that assessed lipid and fatty acid compositions, many only report the mean values of the most abundant fatty acids. There are limited individual records available for wider use in intercomparison or macro‐scale studies. This dataset consists of 4856 records of individual and pooled samples of at least 470 different marine consumer species sampled from tropical, temperate, and polar regions around Australia and in the Southern, Indian, and Pacific Oceans from 1989 to 2018. This includes data for a diverse range of taxa (zooplankton, fish, cephalopods, chondrichthyans, and marine mammals), size ranges (0.02 cm to ~13 m), and that cover a broad range of trophic positions (2.0–4.6). When known, we provide a record of species name, date of sampling, sampling location, body size, relative (%) measurements of tissue‐specific total lipid content and abundant fatty acids, and absolute content (mg 100 g−1 tissue) of eicosapentaenoic acid (EPA, 20:5n3) and docosahexaenoic acid (DHA, 22:6n3) as important long‐chain (≥C20) polyunsaturated omega‐3 fatty acids. These records form a solid basis for comparative studies that will facilitate a broad understanding of the spatial and temporal distribution of marine lipids globally. The dataset also provides reference data for future dietary assessments of marine predators and model assessments of potential impacts of climate change on the availability of marine lipids and fatty acids. There are 480 data records within our data file for which the providers have requested that permission for reuse be granted, with the likely condition that they are included as a coauthor on the reporting of the dataset. Records with this condition are indicated by a “yes” under “Conditions_of_data_use” in Data S1: Marineconsumer_FAdata.csv (see Table 2 in Metadata S1 for more details). For all other data records marked as “No” under “Conditions_of_data_use,” there are no copyright restrictions for research and/or teaching purposes. We request that users acknowledge use of the data in publications, research proposals, websites, and other outlets via formal citation of this work and original data sources as applicable.

Albacore tuna (Thunnus alalunga) is a highly economically important species in the western Indian Ocean. However, knowledge of its ecological and nutritional characteristics, essential for proper management of the species, is lacking in the region. The trophodynamics of the Indian Ocean albacore was thus examined using known fatty acid trophic markers (FATMs) of primary producers, nutritional condition indices (NCIs) (omega-3/omega-6 ratio and total fatty acid content (TFA)), and baseline and lipid corrected stable isotope of carbon (δ13Ccorr) and nitrogen (δ15Ncorr), measured in the muscle tissue. We applied generalized additive mixed models to understand the spatiotemporal patterns and drivers of these tracers, taking into consideration several intrinsic and extrinsic variables: fish size, fishing position, month, chlorophyll-a and sea surface temperature (SST). Both chlorophyll-a and SST were significant as single explanatory variables for all tracers with SST being the best predictor for docosahexaenoic acid/eicosapentaenoic acid ratio, the omega-6 protists FATM, omega-3/omega-6 ratio and δ15Ncorr. TFA was best predicted by fish size only. The best model for δ13Ccorr for males included fishing position only while that for females included fish size, fishing position and month. Higher primary productivity, as inferred by high δ13Ccorr values and diatom contribution, nutritional condition and trophic position, as inferred by high δ15Ncorr values, were observed in albacore from the temperate southern waters than in the northern tropical regions. Relationships between environmental variables and corrected stable isotopes, FATMs confirm that ocean warming and changes in primary productivity will impact nutrient flow and energy transfer in the marine food web which may have negative nutritional outcomes for albacore. This knowledge is particularly crucial in areas where oceanographic conditions and seawater temperatures are changing at a fast rate and should also be taken into consideration by fisheries managers. Highlights► A multi-tracer approach was taken to examine the trophodynamics of albacore tuna. ► Albacore inhabiting temperate southern waters feed on a diatom-based food web. ► Albacore trophic position was lowest in the northern tropical waters. ► Ontogenetic shifts in stable carbon and nitrogen isotopes were observed. ► High seawater temperature lowers the nutritional condition of albacore.

Tuna are marine apex predators that inhabit the tropical and sub-tropical waters of the Indian Ocean where they support socially and economically important fisheries. Key component of pelagic communities, tuna are bioindicator species of anthropogenic and climate-induced changes through modifications of the structure and related energy-flow of food webs and ecosystems. The IndianEcoTuna dataset provides a panel of ecological tracers measured in four soft tissues (white muscle, red muscle, liver, gonads) from 1,364 individuals of four species, i.e., the albacore (ALB, Thunnus alalunga), the bigeye (BET, T. obesus), the skipjack (SKJ, Katsuwomus pelamis), and the yellowfin (YFT, T. albacares), collected throughout the western Indian Ocean from 2009 to 2015. Sampling was carried out during routine monitoring programs, at sea by observers onboard professional vessels or at landing. For each record, the type of fishing gear, the conservation mode, as well as the fishing date and catch location are provided. Individuals were sampled to span a wide range of body sizes: 565 ALB with fork length from 58 to 118 cm, 155 BET from 29.5 to 173 cm, 304 SKJ from 30 to 74 cm, and 340 YFT from 29 to 171.5 cm. The IndianEcoTuna dataset combines: (1) 9,512 records of carbon and nitrogen stable isotopes (percent element weights, δ C and δ N values) in 1,185 fish, (2) 887 concentrations of total proteins in 242 fish, (3) 8,356 concentrations of total lipids and three lipid classes (triacylglycerols TAG; phospholipids PL; sterols ST) in 695 fish, and (4) 1,150 and 1,033 profiles of neutral and polar fatty acids in 397 and 342 fish, respectively. Information on sex and weights of the whole fish, gonads, liver and stomach is provided. Because of the essential trophic role and wide-ranging of tuna in marine systems, and the large panel of tropho-energetic tracers and derived-key quantitative parameters provided (e.g., niche width, trophic position, condition indices), the IndianEcoTuna dataset should be of high interest for global and regional research on marine trophic ecology and food web analysis, as well as on the impacts of anthropogenic changes on Indian Ocean marine ecosystems. There are no copyright restrictions for research and/or teaching purposes. Usage of the dataset must include citation of this Data Paper.