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To investigate the influences of heterogeneity and waning immunity on measles transmission, we formulate a network model with periodic transmission rate, and theoretically examine the threshold dynamics. We numerically find that the waning of immunity can lead to an increase in the basic reproduction number $R_{0}$ R 0 and the density of infected individuals. Moreover, there exists a critical level for average degree above which $R_{0}$ R 0 increases quicker in the scale-free network than in the random network. To design the effective control strategies for the subpopulations with different activities, we examine the optimal control problem of the heterogeneous model. Numerical studies suggest us no matter what the network is, we should implement control measures as soon as possible once the outbreak takes off, and particularly, the subpopulation with high connectivity should require high intensity of interventions. However, with delayed initiation of controls, relatively strong control measures should be given to groups with medium degrees. Furthermore, the allocation of costs (or resources) should coincide with their contact patterns.

In mainland China, measles infection reached the lowest level in 2012 but resurged again after that with a seasonally fluctuating pattern. To investigate the phenomenon of periodic outbreak and identify the crucial parameters that play in the transmission dynamics of measles, we formulate a mathematical model incorporating periodic transmission rate and asymptomatic infection with waning immunity. We define the basic reproduction number as the threshold value to govern whether measles infection dies out or not. Fitting the reported measles cases from 2013 to 2016 to our proposed model, we estimate the basic reproduction number R0 with immunization to be 1.0077. From numerical simulations, we conclude asymptomatic infection does not cause much new infections and the key parameters affecting the transmission of measles are vaccination rate, transmission rate, and recovery rate, which suggests the public to enhance vaccination and protection measures to reduce effective contacts between susceptible and infective individuals and treat infected individuals timely. To minimize the number of infected individuals at a minimal cost, we formulate an optimal control system to design optimal control strategies. Numerical simulations show the effectiveness of optimal control strategies and recommend us to implement the control strategies as soon as possible. In particular, enhancing vaccination is especially effective in lowering the initial outbreak and making disease recurrence less likely.

Most models of COVID-19 are implemented at a single micro or macro scale, ignoring the interplay between immune response, viral dynamics, individual infectiousness and epidemiological contact networks. Here we develop a data-driven model linking the within-host viral dynamics to the between-host transmission dynamics on a multilayer contact network to investigate the potential factors driving transmission dynamics and to inform how school closures and antiviral treatment can influence the epidemic. Using multi-source data, we initially determine the viral dynamics and estimate the relationship between viral load and infectiousness. Then, we embed the viral dynamics model into a four-layer contact network and formulate an agent-based model to simulate between-host transmission. The results illustrate that the heterogeneity of immune response between children and adults and between vaccinated and unvaccinated infections can produce different transmission patterns. We find that school closures play a significant effect on mitigating the pandemic as more adults get vaccinated and the virus mutates. If enough infected individuals are diagnosed by testing before symptom onset and then treated quickly, the transmission can be effectively curbed. Our multiscale model reveals the critical role played by younger individuals and antiviral treatment with testing in controlling the epidemic.

Infectious diseases attack humans from time to time and threaten the lives and survival of people all around the world. An important strategy to prevent the spatial spread of infectious diseases is to restrict population travel. With the reduction of the epidemic situation, when and where travel restrictions can be lifted, and how to organize orderly movement patterns become critical and fall within the scope of this study. We define a novel diffusion distance derived from the estimated mobility network, based on which we provide a general model to describe the spatiotemporal spread of infectious diseases with a random diffusion process and a deterministic drift process of the population. We consequently develop a multi-source data fusion method to determine the population flow in epidemic areas. In this method, we first select available subregions in epidemic areas, and then provide solutions to initiate new travel flux among these subregions. To verify our model and method, we analyze the multi-source data from mainland China and obtain a new travel flux triggering scheme in the selected 29 cities with the most active population movements in mainland China. The testable predictions in these selected cities show that reopening the borders in accordance with our proposed travel flux will not cause a second outbreak of COVID-19 in these cities. The finding provides a methodology of re-triggering travel flux during the weakening spread stage of the epidemic.

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