The ubiquitin system is important for drug discovery, and the discovery of selective small-molecule inhibitors of deubiquitinating enzymes (DUBs) remains an active yet extremely challenging task. With a few exceptions, previously developed inhibitors have been found to bind the evolutionarily conserved catalytic centers of DUBs, resulting in poor selectivity. The small molecule IU1 was the first-ever specific inhibitor identified and exhibited surprisingly excellent selectivity for USP14 over other DUBs. However, the molecular mechanism for this selectivity was elusive. Herein, we report the high-resolution co-crystal structures of the catalytic domain of USP14 bound to IU1 and three IU1 derivatives. All the structures of these complexes indicate that IU1 and its analogs bind to a previously unknown steric binding site in USP14, thus blocking the access of the C-terminus of ubiquitin to the active site of USP14 and abrogating USP14 activity. Importantly, this steric site in USP14 is very unique, as suggested by structural alignments of USP14 with several known DUB X-ray structures. These results, in conjunction with biochemical characterization, indicate a coherent steric blockade mechanism for USP14 inhibition by compounds of the IU series. In light of the recent report of steric blockade of USP7 by FT671, this work suggests a potential generally applicable allosteric mechanism for the regulation of DUBs via steric blockade, as showcased by our discovery of IU1-248 which is 10-fold more potent than IU1.
A novel three-layered catalyst was successfully synthesized by the copolymerization of divinylbenzene and vinyl benzyl chloride in the presence of 3-mercaptopropyltrimethoxysilane-functionalized magnetic nanoparticles (MNPs) followed by quaternization reaction with N-propyl imidazole and alkaline ion exchange, aiming at improving the recyclability of MNPs supported catalysts. The results obtained by FTIR, TG/DTA, SEM, TEM, DLS, and VSM showed that the prepared catalyst consisted of a catalytic layer, protective layer, and magnetic core. The investigation of catalytic performance indicated that the catalyst displayed a remarkable activity for Knoevenagel condensation due to the large amount of OH − ions loading on the surface and a lower activation energy than that of NaOH, but it was sensitive to the polarity of solvent. Furthermore, the existence of a protective layer incorporated between the MNPs and the catalytic layer provided a good way to avoid the corrosion of magnetic nanoparticles, and the catalyst exhibited good stability in alkaline medium. The catalyst could be recycled by an external magnet at least six times without significant change.
New synthetic strategies that exploited the strengths of both chemoselective ligation and recombinant protein expression were developed to prepare K27 di-ubiquitins (diUb), which enabled mechanistic studies on the molecular recognition of K27-linked Ubs by single-molecule Fçrster resonance energy transfer (smFRET) and X-ray crystallography.The results revealed that free K27 diUb adopted acompact conformation, whereas upon binding to UCHL3, K27 diUb was remodeled to an open conformation. The K27 isopeptide bond remained rigidly buried inside the diUb moiety during binding,a ni nteresting unique structural feature that may explain the distinctive biological function of K27 Ub chains.
Pt-based electrocatalysts are essential to direct methanol fuel cells (DMFCs), but their sluggish reaction kinetics, poor stability, inefficient Pt utilization and susceptibility to CO poisoning hamper the widespread application of...
New synthetic strategies that exploited the strengths of both chemoselective ligation and recombinant protein expression were developed to prepare K27 di-ubiquitins (diUb), which enabled mechanistic studies on the molecular recognition of K27-linked Ubs by single-molecule Fçrster resonance energy transfer (smFRET) and X-ray crystallography.The results revealed that free K27 diUb adopted acompact conformation, whereas upon binding to UCHL3, K27 diUb was remodeled to an open conformation. The K27 isopeptide bond remained rigidly buried inside the diUb moiety during binding,a ni nteresting unique structural feature that may explain the distinctive biological function of K27 Ub chains.
A supported alkaline imidazolium ionic liquid catalyst with an ionic liquid shell and polystyrene core was synthesized. The core−shell structure was achieved by swelling polymerization of 4-vinylbenzyl chloride and divinylbenzene around polystyrene particles followed by quaternization reaction with 1-propyl-1H-imidazole and ion exchange. The results obtained from FTIR, SEM, TEM, TGA, DLS, and elemental analysis indicated that the ionic liquid shell was successfully coated on polystyrene spheres. The core−shell catalyst displayed excellent activity and solvent tolerance for Knoevenagel condensation of benzaldehyde with ethyl cyanoacetate because of its good dispersion, low mass-transfer resistance, and good swelling property. Meanwhile, it exhibited superb stability and recyclability, benefitting from the active species being anchored to the highly cross-linked polymer carrier. The catalyst was reused 10 times in water or methanol without significant change in catalytic activity, composition, and microstructure. Moreover, the catalytic performance of the prepared catalyst was weakened by the increased masstransfer resistance with the movement of active sites from the surface to the interior of the carrier.
A novel
ionic liquid immobilized on a magnetic polymer microsphere
catalyst is reported in this paper. The obtained core–shell–shell
catalyst consisted of magnetic nanoparticles (MNPs) as the core, catalytic
inert St-co-DVB as the intermediate protective layer, and cross-linked
polyaryl imidazole ionic liquids as the active catalytic layer located
at the outermost [Im[OH]/MNPs@P(St-DVB)@P(VBC-DVB)]. This catalyst
exhibited a high ion-exchange rate (64.65%), high saturation magnetic
strength, and excellent acid and alkali corrosion resistance. In the
catalyzed Knoevenagel condensation of benzaldehyde and ethyl cyanoacetate,
the conversion of benzaldehyde maintained at 92.1% during six times
reuse. Optimizing the materials of the protective layer and regulating
the thickness of the inert protective layer decreased the corrosion
ratio of MNPs in acidic media from 44.82 to 0.44%. Adjusting the thickness
of the catalytic layer realized excellent catalytic activity (97%)
and high magnetic response performance. In summary, introducing an
inert protective layer to the structure of ionic liquids immobilized
on the magnetic polymer microsphere catalyst, regulating its thickness,
and optimizing its structure achieved a catalyst with high activity,
excellent stability, and easy magnetic separation.
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