Ammonia (NH3) emission inventories are an essential input in chemical transport models and are helpful for policy-makers to refine mitigation strategies. However, current estimates of Chinese NH3 emissions still have large uncertainties. In this study, an improved inversion estimation of NH3 emissions in China has been made using an ensemble Kalman filter and the Nested Air Quality Prediction Modeling System. By first assimilating the surface NH3 observations from the Ammonia Monitoring Network in China at a high resolution of 15 km, our inversion results have provided new insights into the spatial and temporal patterns of Chinese NH3 emissions. More enhanced NH3 emission hotspots, likely associated with industrial or agricultural sources, were captured in northwest China, where the a posteriori NH3 emissions were more than twice the a priori emissions. Monthly variations of NH3 emissions were optimized in different regions of China and exhibited a more distinct seasonality, with the emissions in summer being twice those in winter. The inversion results were well-validated by several independent datasets that traced gaseous NH3 and related atmospheric processes. These findings highlighted that the improved inversion estimation can be used to advance our understanding of NH3 emissions in China and their environmental impacts.

A top-down approach was employed to estimate the influence of lockdown measures implemented during the COVID-19 pandemic on NO x emissions and subsequent influence on surface PM 2.5 and ozone in China. The nation-wide NO x emission reduction of 53.4% due to the lockdown in 2020 quarter one in China may represent the current upper limit of China's NO x emission control. During the Chinese New Year Holiday (P2), NO x emission intensity in China declined by 44.7% compared to the preceding 3 weeks (P1). NO x emission intensity increased by 20.3% during the 4 weeks after P2 (P3), despite the unchanged NO 2 column. It recovered to 2019 level at the end of March (P4). The East China (22°N - 42°N, 102°E - 122°E) received greater influence from COVID-19. Overall NO x emission from East China for 2020 first quarter is 40.5% lower than 2019, and in P4 it is still 22.9% below the same period in 2019. The 40.5% decrease of NO x emission in 2020 first quarter in East China lead to 36.5% increase of surface O 3 and 12.5% decrease of surface PM 2.5 . The elevated O 3 promotes the secondary aerosol formation through heterogeneous pathways. We recommend that the complicated interaction between PM 2.5 and O 3 should be considered in the emission control strategy making process in the future.

Although there are various Conus species with publicly available transcriptome and proteome data, no genome assembly has been reported yet. Here, using Chinese tubular cone snail (C. betulinus) as a representative, we sequenced and assembled the first Conus genome with original identification of 133 genome-widely distributed conopeptide genes. After integration of our genomics, transcriptomics, and peptidomics data in the same species, we established a primary genetic central dogma of diverse conopeptides, assuming a rough number ratio of ~1:1:1:10s for the total genes: transcripts: proteins: post-translationally modified peptides. This ratio may be special for this worm-hunting Conus species, due to the high diversity of various Conus genomes and the big number ranges of conopeptide genes, transcripts, and peptides in previous reports of diverse Conus species. Only a fraction (45.9%) of the identified conotopeptide genes from our achieved genome assembly are transcribed with transcriptomic evidence, and few genes individually correspond to multiple transcripts possibly due to intraspecies or mutation-based variances. Variable peptide processing at the proteomic level, generating a big diversity of venom conopeptides with alternative cleavage sites, post-translational modifications, and N-/C-terminal truncations, may explain how the 133 genes and ~123 transcripts can generate thousands of conopeptides in the venom of individual C. betulinus. We also predicted many conopeptides with high stereostructural similarities to the putative analgesic ω-MVIIA, addiction therapy AuIB and insecticide ImI, suggesting that our current genome assembly for C. betulinus is a valuable genetic resource for high-throughput prediction and development of potential pharmaceuticals.

Human Proteome Project (HPP) aims at mapping entire human proteins with a systematic effort upon all the emerging techniques, which would enhance understanding of human biology and lay a foundation for development of medical applications. Until now, 2563 missing proteins (MPs, PE2-4) are still undetected even using the most sensitive approach of protein detection. Herein, we propose that enrichment of low-abundance proteins benefits MPs finding. ProteoMiner is an equalizing technique by reducing high-abundance proteins and enriching low-abundance proteins in biological liquids. With triton X-100/TBS buffer extraction, ProteoMiner enrichment, and peptide fractionation, 20 MPs (at least two non-nested unique peptides with more than eight a.a. length) with 60 unique peptides were identified from four human tissues including eight membrane/secreted proteins and five nucleus proteins. Then 15 of them were confirmed with two non-nested unique peptides (≥9 a.a.) identified by matching well with their chemically synthetic peptides in PRM assay. Hence, these results demonstrated ProteoMiner as a powerful means in discovery of MPs.

For centuries, the rapid development of human society has already made human activity the dominant factor in the terrestrial ecosystem. As the city of greatest importance in China, the capital Beijing has experienced eco-environmental changes with unprecedented economic and population growth during the past few decades. To better understand the ecological transition and its correlations in Beijing, Landsat Thematic Mapper (TM) and Operational Land Imager (OLI) images were used to investigate vegetation coverage changes using a dimidiate pixel model. Piecewise linear regression, bivariate-partial correlation analysis, and factor analysis were applied to the probing of the relationship between vegetation coverage changes and climatic/human-induced factors. The results showed that from 2000 to 2005, 2005 to 2010, and 2010 to 2015, Beijing experienced both restoration (6.33%, 10.08%, and 12.81%, respectively) and degradation (13.62%, 9.35%, and 9.49%, respectively). The correlation analysis results between climate and vegetation changes demonstrated that from 2000 to 2015, both the multi-year annual mean temperature (r = −0.819, p < 0.01) and the multi-year annual mean precipitation (r = 0.653, p < 0.05) had a significantly correlated relationship with vegetation change. The Beijing-Tianjin Sandstorm Source Control Project (BTSSCP) has shown beneficial spatial effects on vegetation restoration; the total effectiveness in conservation areas (84.94 in 2000-2010) was much better than non-BTSSCP areas (34.34 in 2000-2010). The most contributory socioeconomic factors were the population (contribution = 54.356%) and gross domestic product (GDP) (contribution = 30.677%). The population showed a significantly negative correlation with the overall vegetation coverage (r = −0.684, p < 0.05). The GDP was significantly negatively correlated with vegetation in Tongzhou, Daxing, Central city, Fangshan, Shunyi, and Changping (r = −0.601, p < 0.01), while positively related in Huairou, Miyun, Pinggu, Mentougou and Yanqing (r = 0.614, p < 0.01). These findings confirm that human activity is a very significant factor in impacting and explaining vegetation changes, and that some socioeconomic influences on vegetation coverage are highly spatially heterogeneous, based on the context of different areas.

Currently, the commercial reagents for isobaric peptides labeling (TMT and iTRAQ) have some drawbacks, such as high cost in experiments, especially in quantitation for the modified peptides, and inconvenient handling for variable sizes of samples. Herein, we developed a set of 10-plex isobaric tags (IBT) with high stability and low cost. The labeled peptides were sensitively detected on Orbitrap Q Exactive MS with an MS2 resolution of 35 000 at 30% NCE, while the peptides were efficiently labeled over 97% by IBT at a ratio of 10:1 of reagent/peptide (w/w) in 200 mM TEAB buffer for 2 h. The IBT labeling was demonstrated with a wide dynamic range of 50-fold without obvious matrix effects on quantification. Importantly, there was little quantification bias found among the individual IBT tags, indicating that the peptides labeled by different tags were quantitatively comparable. The IBT 10-plex reagents were applied for dynamically monitoring the quantitative responses of phosphoproteome stimulated by EGF treatment in HeLa cells. In total, 5 361 unique phosphopeptides were identified, which reached a similar conclusion as others reported. The IBT reagents were therefore experimentally proven as a new type of reagents for isobaric peptides labeling and useful in a large quantity peptides of quantitative proteomics.

The sampling and analysis were based on WMO recommendations for a background network with some modifications according to local conditions and environmental characteristics, which include the following precipitation constituents and related parameters: pH, conductivity, CO 2 partial pressure, total suspended particles, and the content of K

Following an enormous effort by the global scientific community coordinated by HUPO's Human Proteome Project, the number of proteins without high-quality MS or other evidence (colloquially termed missing proteins) has substantially decreased; however, some highly hydrophobic MPs remain on the list. We believe that efficient peptide separation is an approach that can be used to improve the identification of these hydrophobic MPs. We propose that peptides prepared from the membrane fractions of human cell lines and placental tissue can be well separated from hydrophilic peptides in organic solvents at high concentrations due to the precipitation of hydrophilic peptides with lower solubility. Using a combination strategy of peptide separation in 98% acetonitrile prior to traditional 2D reverse-phase liquid chromatography, more hydrophobic peptides were detected in the supernatants of the organic solvent extractions than were found in the pellets. When this strategy was adopted, 30 MPs (≥2 non-nested unique peptides with ≥9 amino acids) with 114 unique peptides were identified at protein false discovery rate (FDR) < 1%, including 7, 12, and 13 MPs obtained from membrane preparations derived from K562, HeLa cells, and human placenta, respectively. Of the 30 MPs identified in this study, 19 were categorized as membrane proteins or extracellular matrix proteins. Furthermore, 20 were verified to possess two non-nested unique peptides through parallel reaction monitoring with the corresponding chemically synthesized peptides. The use of organic solvents at high concentrations was shown to be an efficient way to improve the exploration of hydrophobic MPs. The data obtained in this study are available via ProteomeXchange (PXD010630) and PeptideAtlas (PASS01218).