Breeding for Fusarium head blight (FHB) resistance in durum wheat is complicated by the quantitative trait expression and narrow genetic diversity of available resources. High-density mapping of the FHB resistance quantitative trait loci (QTL), evaluation of their co-localization with plant height and maturity QTL and the interaction among the identified QTL are the objectives of this study. Two doubled haploid (DH) populations, one developed from crosses between Triticum turgidum ssp. durum lines DT707 and DT696 and the other between T. turgidum ssp. durum cv. Strongfield and T. turgidum ssp. carthlicum cv. Blackbird were genotyped using the 90K Infinium iSelect chip and evaluated phenotypically at multiple field FHB nurseries over years. A moderate broad-sense heritability indicated a genotype-by-environment interaction for the expression of FHB resistance in both populations. Resistance QTL were identified for the DT707 × DT696 population on chromosomes 1B, 2B, 5A (two loci) and 7A and for the Strongfield × Blackbird population on chromosomes 1A, 2A, 2B, 3A, 6A, 6B and 7B with the QTL on chromosome 1A and those on chromosome 5A being more consistently expressed over environments. FHB resistance co-located with plant height and maturity QTL on chromosome 5A and with a maturity QTL on chromosome 7A for the DT707 × DT696 population. Resistance also co-located with plant height QTL on chromosomes 2A and 3A and with maturity QTL on chromosomes 1A and 7B for the Strongfield × Blackbird population. Additive × additive interactions were identified, for example between the two FHB resistance QTL on chromosome 5A for the DT707 × DT696 population and the FHB resistance QTL on chromosomes 1A and 7B for the Strongfield × Blackbird population. Application of the Single Nucleotide Polymorphic (SNP) markers associated with FHB resistance QTL identified in this study will accelerate combining genes from the two populations.

Although many screening criteria have been suggested to distinguish between genotypes for their salt tolerance under controlled environmental conditions, there is a need to test these criteria in the field. Saline soils are often complex and, therefore, unlikely to show a simple relationship to controlled conditions. To address this deficit, different agronomic and physiological screening criteria for salt tolerance in wheat at different stages were examined under both field and controlled conditions. Four wheat genotypes differing in their salt-tolerance levels were grown in salt-affected soil at two different locations and also under greenhouse conditions. Dry weight and leaf area of the upper and lower two leaves of the main stem and total dry weight at Zadoks scale 47 were measured in plants grown under field conditions. The concentrations of Cl ) , Na + , K + and Ca 2+ in the upper and lower two leaves of the main stem at Zadoks scale 47 and different yield components were measured in plants grown under both conditions. Our results indicate that measurements derived from the upper two leaves of the main stem were generally more effective as screening criteria than those from the lower two leaves. Correlation coefficients between grain yield and either dry weight or leaf area of the upper two leaves of the main stem indicated that dry weight is inferior to leaf area as a screening criterion under field conditions. Number of sterile spikelets per plant performed well under both conditions, whereas the number of spikelets per plant and 1000-grain weight failed to distinguish the differences of salt-tolerance levels among genotypes accurately. Weight and number of grains per plant and number of fertile spikes per plant were poor criteria under controlled conditions, but effective under field conditions. The maintenance of low Cl ) and Na + concentrations in the upper two leaves offered the best guide to salt tolerance under both conditions. Potassium concentration was a poor criterion compared with the selectivity of K + over Na + , which was useful under both field and controlled conditions. Calcium concentration and Ca 2+ over Na + selectivity in the upper and/or lower two leaves of the main stem were also effective in ranking genotypes according to their salt tolerance under both field and controlled conditions. Therefore, we conclude that simple measurements of the upper two leaves of the main stem including a straightforward measurement of leaf area, visually estimating the number of sterile spikelets, and a quick, practical determination of Na + and Ca 2+ concentration constitute effective criteria to screen wheat genotypes for salt tolerance under both field and controlled conditions.

Background Fusarium head blight resistance genes, Fhb1 (for Type-II resistance), Fhb2 (Type-II), and Fhb5 (Type-I plus some Type-II), which originate from Sumai 3, are among the most important that confer resistance in hexaploid wheat. Near-isogenic lines (NILs), in the CDC Alsask (susceptible; n = 32) and CDC Go (moderately susceptible; n = 38) backgrounds, carrying these genes in all possible combinations were developed using flanking microsatellite markers and evaluated for their response to FHB and deoxynivalenol (DON) accumulation in eight environments. NILs were haplotyped with wheat 90 K iSelect assay to elucidate the genomic composition and confirm alleles’ presence. Other than evaluating the effects of three major genes in common genetic background, the study elucidated the epistatic gene interactions as they influence FHB measurements; identified loci other than Fhb1 , Fhb2 , and Fhb5 , in both recurrent and donor parents and examined annotated proteins in gene intervals. Results Genotyping using 81,857 single nucleotide polymorphism (SNP) markers revealed polymorphism on all chromosomes and that the NILs carried < 3% of alleles from the resistant donor. Significant improvement in field resistance (Type-I + Type-II) resulted only among the CDC Alsask NILs, not the CDC Go NILs. The phenotypic response of NILs carrying combinations of Sumai 3 derived genes suggested non-additive responses and Fhb5 was as good as Fhb1 in conferring field resistance in both populations. In addition to Fhb1 , Fhb2 , and Fhb5, four to five resistance improving alleles in both populations were identified and three of five in CDC Go were contributed by the susceptible parent. The introgressed chromosome regions carried genes encoding disease resistance proteins, protein kinases, nucleotide-binding and leucine rich repeats’ domains. Complex epistatic gene-gene interactions among marker loci (including Fhb1 , Fhb2 , Fhb5 ) explained > 20% of the phenotypic variation in FHB measurements. Conclusions Immediate Sumai 3 derivatives carry a number of resistance improving minor effect alleles, other than Fhb1 , Fhb2 , Fhb5 . Results verified that marker-assisted selection is possible for the introgression of exotic FHB resistance genes, however, the genetic background of the recipient line and epistatic interactions can have a strong influence on expression and penetrance of any given gene. Electronic supplementary material The o...

Stem solidness is an important agronomic trait of durum (Triticum turgidum L. var. durum) and bread (Triticum aestivum L.) wheat that provides resistance to the wheat stem sawfly. This dominant trait is conferred by the SSt1 locus on chromosome 3B. However, the molecular identity and mechanisms underpinning stem solidness have not been identified. Here, we demonstrate that copy number variation of TdDof, a gene encoding a putative DNA binding with one finger protein, controls the stem solidness trait in wheat. Using map-based cloning, we localized TdDof to within a physical interval of 2.1 Mb inside the SSt1 locus. Molecular analysis revealed that hollow-stemmed wheat cultivars such as Kronos carry a single copy of TdDof, whereas solid-stemmed cultivars such as CDC Fortitude carry multiple identical copies of the gene. Deletion of all TdDof copies from CDC Fortitude resulted in the loss of stem solidness, whereas the transgenic overexpression of TdDof restored stem solidness in the TdDof deletion mutant pithless1 and conferred stem solidness in Kronos. In solid-stemmed cultivars, increased TdDof expression was correlated with the down-regulation of genes whose orthologs have been implicated in programmed cell death (PCD) in other species. Anatomical and histochemical analyses revealed that hollow-stemmed lines had stronger PCD-associated signals in the pith cells compared to solid-stemmed lines, which suggests copy number-dependent expression of TdDof could be directly or indirectly involved in the negative regulation of PCD. These findings provide opportunities to manipulate stem development in wheat and other monocots for agricultural or industrial purposes.