Examining interactions between nanomaterials and cell membranes can expose underlying mechanisms of nanomaterial cytotoxicity and guide the design of safer nanomedical technologies. Recently, graphene has been shown to exhibit potential toxicity to cells; however, the molecular processes driving its lethal properties have yet to be fully characterized. We here demonstrate that graphene nanosheets (both pristine and oxidized) can produce holes (pores) in the membranes of A549 and Raw264.7 cells, substantially reducing cell viability. Electron micrographs offer clear evidence of pores created on cell membranes. Our molecular dynamics simulations reveal that multiple graphene nanosheets can cooperate to extract large numbers of phospholipids from the membrane bilayer. Strong dispersion interactions between graphene and lipid-tail carbons result in greatly depleted lipid density within confined regions of the membrane, ultimately leading to the formation of water-permeable pores. This cooperative lipid extraction mechanism for membrane perforation represents another distinct process that contributes to the molecular basis of graphene cytotoxicity.
Ultra-thin nanopores have become promising biological sensors because of their outstanding signal-to-noise ratio and spatial resolution. Here, we show that boron nitride (BN), which is a new two-dimensional (2D) material similar to graphene, could be utilized for making a nanopore with an atomic thickness. Using an all-atom molecular dynamics simulation, we investigated the dynamics of DNA translocation through the BN nanopore. The results of our simulations demonstrated that it is possible to detect different double-stranded DNA (dsDNA) sequences from the recording of ionic currents through the pore during the DNA translocation. Surprisingly, opposite to results for a graphene nanopore, we found the calculated blockage current for poly(A-T)40 in a BN nanopore to be less than that for poly(G-C)40. Also in contrast with the case of graphene nanopores, dsDNA models moved smoothly and in an unimpeded manner through the BN nanopores in the simulations, suggesting a potential advantage for using BN nanopores to design stall-free sequencing devices. BN nanopores, which display several properties (such as being hydrophilic and non-metallic) that are superior to those of graphene, are thus expected to find applications in the next generation of high-speed and low-cost biological sensors.
Symmetries are ubiquitous in network systems and have profound impacts on the observable dynamics. At the most fundamental level, many synchronization patterns are induced by underlying network symmetry, and a high degree of symmetry is believed to enhance the stability of identical synchronization. Yet, here we show that the synchronizability of almost any symmetry cluster in a network of identical nodes can be enhanced precisely by breaking its structural symmetry. This counterintuitive effect holds for generic node dynamics and arbitrary network structure and is, moreover, robust against noise and imperfections typical of real systems, which we demonstrate by implementing a state-of-the-art optoelectronic experiment. These results lead to new possibilities for the topological control of synchronization patterns, which we substantiate by presenting an algorithm that optimizes the structure of individual clusters under various constraints.
A scenario has recently been reported in which in order to stabilize complete synchronization of an oscillator network-a symmetric state-the symmetry of the system itself has to be broken by making the oscillators nonidentical. But how often does such behavior-which we term asymmetryinduced synchronization (AISync)-occur in oscillator networks? Here we present the first general scheme for constructing AISync systems and demonstrate that this behavior is the norm rather than the exception in a wide class of physical systems that can be seen as multilayer networks. Since a symmetric network in complete synchrony is the basic building block of cluster synchronization in more general networks, AISync should be common also in facilitating cluster synchronization by breaking the symmetry of the cluster subnetworks.
We report on a new type of chimera state that attracts almost all initial conditions and exhibits power-law switching behavior in networks of coupled oscillators. Such switching chimeras consist of two symmetric configurations, which we refer to as subchimeras, in which one cluster is synchronized and the other is incoherent. Despite each subchimera being linearly stable, switching chimeras are extremely sensitive to noise: arbitrarily small noise triggers and sustains persistent switching between the two symmetric subchimeras. The average switching frequency increases as a power law with the noise intensity, which is in contrast with the exponential scaling observed in typical stochastic transitions. Rigorous numerical analysis reveals that the power-law switching behavior originates from intermingled basins of attraction associated with the two subchimeras, which in turn are induced by chaos and symmetry in the system. The theoretical results are supported by experiments on coupled optoelectronic oscillators, which demonstrate the generality and robustness of switching chimeras. arXiv:1911.07871v1 [cond-mat.dis-nn]
An outstanding problem in the study of networks of heterogeneous dynamical units concerns the development of rigorous methods to probe the stability of synchronous states when the differences between the units are not small. Here, we address this problem by presenting a generalization of the master stability formalism that can be applied to heterogeneous oscillators with large mismatches. Our approach is based on the simultaneous block diagonalization of the matrix terms in the variational equation, and it leads to dimension reduction that simplifies the original equation significantly. This new formalism allows the systematic investigation of scenarios in which the oscillators need to be nonidentical in order to reach an identical state, where all oscillators are completely synchronized. In the case of networks of identically coupled oscillators, this corresponds to breaking the symmetry of the system as a means to preserve the symmetry of the dynamical state-a recently discovered effect termed asymmetry-induced synchronization (AISync). Our framework enables us to identify communication delay as a new and potentially common mechanism giving rise to AISync, which we demonstrate using networks of delay-coupled Stuart-Landau oscillators. The results also have potential implications for control, as they reveal oscillator heterogeneity as an attribute that may be manipulated to enhance the stability of synchronous states. PACS numbers: 05.45.Xt, 89.75.Fb, 89.75.-k AMS classification scheme numbers: 34C15, 35B36
A widely held assumption on network dynamics is that similar components are more likely to exhibit similar behavior than dissimilar ones and that generic differences among them are necessarily detrimental to synchronization. Here, we show that this assumption does not generally hold in oscillator networks when communication delays are present. We demonstrate, in particular, that random parameter heterogeneity among oscillators can consistently rescue the system from losing synchrony. This finding is supported by electrochemical-oscillator experiments performed on a multielectrode array network. Remarkably, at intermediate levels of heterogeneity, random mismatches are more effective in promoting synchronization than parameter assignments specifically designed to facilitate identical synchronization. Our results suggest that, rather than being eliminated or ignored, intrinsic disorder in technological and biological systems can be harnessed to help maintain coherence required for function.
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