Background Genome editing tools are important for functional genomics research and biotechnology applications. Recently, the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 (Cas9) system for gene knockout has emerged as the most effective genome-editing tool. It has previously been reported that, in rice plants, knockdown of the Os8N3 gene resulted in enhanced resistance to Xanthomonas oryzae pv. oryzae ( Xoo ), while displaying abnormal pollen development. Results The CRISPR/Cas9 system was employed to knockout rice Os8N3 , in order to confer enhanced resistance to Xoo . Analysis of the genotypes and edited Os8N3 in T 0 , T 1 , T 2 , and T 3 transgenic rice plants showed that the mutations were transmitted to subsequent generations, and homozygous mutants displayed significantly enhanced resistance to Xoo . Stable transmission of CRISPR/Cas9-mediated Os8N3 gene editing without the transferred DNA (T-DNA) was confirmed by segregation in the T 1 generation. With respect to many investigated agronomic traits including pollen development, there was no significant difference between homozygous mutants and non-transgenic control plants under greenhouse growth conditions. Conclusion Data from this study indicate that the CRISPR/Cas9-mediated Os8N3 edition can be successfully employed for non-transgenic crop improvements. Electronic supplementary material The online version of this article (10.1186/s12284-019-0325-7) contains supplementary material, which is available to authorized users.

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Alternaria leaf blight is one of the most common diseases in watermelon worldwide. In Korea, however, the Alternaria species causing the watermelon leaf blight have not been investigated thoroughly. A total of 16 Alternaria isolates was recovered from diseased watermelon leaves with leaf blight symptoms, which were collected from 14 fields in Korea. Analysis of internal transcribed spacer (ITS) region, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and RNA polymerase II second largest subunit (RPB2) were not competent to differentiate the Alternaria isolates. On the contrary, analysis of amplicon size of the histone H3 (HIS3) gene successfully differentiated the isolates into three Alternaria subgroups, and further sequence analysis of them identified three Alternaria spp. Alternaria tenuissima, A. gaisen, and A. alternata. Representative Alternaria isolates from three species induced dark brown leaf spot lesions on detached watermelon leaves, indicating that A. tenuissima, A. gaisen, and A. alternata are all causal agents of Alternaria leaf blight. Our results indicate that the Alternaria species associated watermelon leaf blight in Korea is more complex than reported previously. This is the first report regarding the population structure of Alternaria species causing watermelon leaf blight in Korea.

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Powdery mildew is a common and serious disease of the Cucurbitaceae including cucumber (Cucumis sativus) in most areas of the world. To identify causal agents of the powdery mildew and their physiological race(s), we collected cucumber leaves displaying typical symptoms of powdery mildew from different locations in Korea. Based on morphological and molecular characteristics, all powdery mildew isolates were identified as an obligate biotrophic fungal pathogen, Podosphaera xanthii. After inoculation at melon (Cucumis melo) differentials to identify the fungal race(s), P. xanthii isolate MI180427 and IC190611 were identified as race 1 which has been repeatedly reported as dominant race in Korea. However, another isolate SE180328 produced different disease response in the tested differentials, being identified as race 2 which has not been reported in Korea. To confirm the race of SE180328, we inoculated additional melon differentials and determined the isolate as race 2F that is the prevalent race of powdery mildew in Beijing, China. Report of this new race 2F in Korea will be helpful for future breeding programs to develop resistant varieties to this race.