We have determined the atomic structure of the bacteriochlorophyll c (BChl c) assembly in a huge light-harvesting organelle, the chlorosome of green photosynthetic bacteria, by solid-state NMR. Previous electron microscopic and spectroscopic studies indicated that chlorosomes have a cylindrical architecture with a diameter of Ϸ10 nm consisting of layered BChl molecules. Assembly structures in huge noncrystalline chlorosomes have been proposed based mainly on structure-dependent chemical shifts and a few distances acquired by solid-state NMR, but those studies did not provide a definite structure. Our approach is based on 13 C dipolar spindiffusion solid-state NMR of uniformly 13 C-labeled chlorosomes under magic-angle spinning. Approximately 90 intermolecular COC distances were obtained by simultaneous assignment of distance correlations and structure optimization preceded by polarization-transfer matrix analysis. It was determined from the Ϸ90 intermolecular distances that BChl c molecules form piggybackdimer-based parallel layers. This finding rules out the well known monomer-based structures. A molecular model of the cylinder in the chlorosome was built by using this structure. It provided insights into the mechanisms of efficient light harvesting and excitation transfer to the reaction centers. This work constitutes an important advance in the structure determination of huge intact systems that cannot be crystallized.spin diffusion ͉ distance analysis ͉ photosynthesis ͉ antenna complex ͉ excitation transfer P hotosynthesis is the primary energy source for all living organisms. Chlorophyll-protein complexes capture light energy in most photosynthetic systems. Their structures are well known (1, 2). However, there are other light-harvesting devices called chlorosomes, which contain bacteriochlorophyll (BChl) assemblies. No protein is present in the BChl assemblies in sharp contrast to the light-harvesting chlorophyll-protein complexes mentioned above. Chlorosomes are found only in green sulfur bacteria and green filamentous bacteria. They catch weak light in an environment (3). A green sulfur bacterium species found in a deep-sea hydrothermal vent (4), for example, uses the dim light of geothermal radiation for photosynthesis. The atomic structure of chlorosomes has not been determined, which has impeded structure-based study of their functions. Because the design of chlorosomes is completely different from that of other light-harvesting devices, elucidation of their structure provides insight into the light-harvesting mechanism involved.Freeze-fracture electron microscopy revealed that chlorosomes were oblong bodies filled with several rod-shaped elements and were attached to the cytoplasmic side of cell membranes (5, 6). The rod elements of Chlorobium limicola, the target of this work, are composed of BChl c. Light energy captured by BChl c in the rod elements is transferred to the reaction centers in the cytoplasmic membrane through BChl a in baseplate proteins (7). The BChl c molecule has two stereoisomers...

To examine the mechanisms of electron injection to TiO2 in retinoic acid (RA) and carotenoic acids (CAs), including RA5, CA6, CA7, CA8, CA9, and CA11 having the number of conjugated double bonds n = 5, 6, 7, 8, 9, and 11, respectively, their subpicosecond time-resolved absorption spectra were recorded free in solution and bound to TiO2 nanoparticles in suspension. The time-resolved spectra were analyzed by singular-value decomposition (SVD) followed by global fitting based on an energy diagram consisting of the 3A(g)(-), 1B(u)(-), 1B(u)(+), and 2A(g)(-) singlet excited states, whose energies had been determined as functions of 1/(2n + 1) by the use of carotenoids with n = 9-13. It was found that electron injection took place from both the 1B(u)(+) and 2A(g)(-) states in RA5, CA6, CA7, and CA8, whereas only from the 1B(u)(+) state in CA9 and CA11. The electron-injection efficiencies were determined, by the use of the relevant time constants determined by the SVD and global-fitting analyses, to be in the following order: RA5 approximately CA6 < CA7 > CA8 > CA9 > CA11. To determine the mechanism of charge recombination via the T(1) state, submicrosecond time-resolved absorption spectra of RA5, CA6, CA7, and CA8 bound to TiO2 nanoparticles in suspension were recorded. The SVD and global-fitting analyses lead us to a new scheme, which includes the formation of the D(0)(*+) - T(1) complex followed by transformation to both the D(0)(*+) and T(1) states. On the other hand, their one-electron oxidation potentials were determined, and their singlet and triplet levels were scaled to the conduction band edge (CBE) of TiO2. The T(1) level was lower than, but closest to, the CBE in RA5, and it became lower in the order RA5, CA6, CA7, and CA8. Consistent with the energy gap between the CBE and the T(1) levels, the generation of the T(1) state (or in other words, charge recombination) decreased in the order RA5 > CA6 > CA7 > CA8.

In addition to the roles of antioxidant and spacer, carotenoids (Cars) in purple photosynthetic bacteria pursue two physiological functions, i.e., light harvesting and photoprotection. To reveal the mechanisms of the photoprotective function, i.e., quenching triplet bacteriochlorophyll to prevent the sensitized generation of singlet oxygen, the triplet absorption spectra were recorded for Cars, where the number of conjugated double bonds (n) is in the region of 9-13, to determine the dependence on n of the triplet lifetime. The Cars examined include those in (a) solution; (b) the reconstituted LH1 complexes; (c) the native LH2 complexes from Rba. sphaeroides G1C, Rba. sphaeroides 2.4.1, Rsp. molischianum, and Rps. acidophila 10050; (d) the RCs from Rba. sphaeroides G1C, Rba. sphaeroides 2.4.1, and Rsp. rubrum S1; and (e) the RC-LH1 complexes from Rba. sphaeroides G1C, Rba. sphaeroides 2.4.1, Rsp. molischianum, Rps. acidophila 10050, and Rsp. rubrum S1. The results lead us to propose the following mechanisms: (i) A substantial shift of the linear dependence to shorter lifetimes on going from solution to the LH2 complex was ascribed to the twisting of the Car conjugated chain. (ii) A substantial decrease in the slope of the linear dependence on going from the reconstituted LH1 to the LH1 component of the RC-LH1 complex was ascribed to the minor-component Car forming a leak channel of triplet energy. (iii) The loss of conjugation-length dependence on going from the isolated RC to the RC component of the RC-LH1 complex was ascribed to the presence of a triplet-energy reservoir consisting of bacteriochlorophylls in the RC component.

The stacking of the bacteriochlorophyll (BChl) c macrocycles and the role of water in forming an aggregate sheet, in chlorosome, were examined by means of (13)C NMR spectroscopy, the measurement of the X-ray diffraction pattern, and (25)Mg NMR spectroscopy. (1) The stacking of the macrocycles, i.e., weakly overlapped dimers forming displaced layers, was selected out of six different kinds of stacking so far identified in the aggregates of isomeric BChl c in solution and in the solid aggregate of an isomeric mixture of BChl c extracted from Chlorobium limicola. The selection was based on the comparison of the intermolecular (13)C...(13)C magnetic-dipole correlations with the nearest-neighbor carbon-to-carbon close contacts simulated for the above six different stackings. It has turned out that the stacking of the macrocycles in chlorosome is basically the same as that in the in vitro solid aggregate. (2) The crucial role of water in stabilizing the aggregate structure in chlorosome was shown by tracing the dehydration processes and by comparison with the solid aggregate using the X-ray diffraction pattern. Possible binding sites of water molecules were located, by structural simulation, based on the particular stacking structure. (3) The dimer-based stacking of the macrocycles was evidenced by (25)Mg NMR spectroscopy, which exhibited a pair of signals showing different quadrupole coupling, due to the presence or absence of a water molecule in the axial position.