Atmospheric vapor pressure deficit (VPD) is a critical variable in determining plant photosynthesis. Synthesis of four global climate datasets reveals a sharp increase of VPD after the late 1990s. In response, the vegetation greening trend indicated by a satellite-derived vegetation index (GIMMS3g), which was evident before the late 1990s, was subsequently stalled or reversed. Terrestrial gross primary production derived from two satellite-based models (revised EC-LUE and MODIS) exhibits persistent and widespread decreases after the late 1990s due to increased VPD, which offset the positive CO2 fertilization effect. Six Earth system models have consistently projected continuous increases of VPD throughout the current century. Our results highlight that the impacts of VPD on vegetation growth should be adequately considered to assess ecosystem responses to future climate conditions.

Seaweeds are essential for marine ecosystems and have immense economic value. Here we present a comprehensive analysis of the draft genome of Saccharina japonica, one of the most economically important seaweeds. The 537-Mb assembled genomic sequence covered 98.5% of the estimated genome, and 18,733 protein-coding genes are predicted and annotated. Gene families related to cell wall synthesis, halogen concentration, development and defence systems were expanded. Functional diversification of the mannuronan C-5-epimerase and haloperoxidase gene families provides insight into the evolutionary adaptation of polysaccharide biosynthesis and iodine antioxidation. Additional sequencing of seven cultivars and nine wild individuals reveal that the genetic diversity within wild populations is greater than among cultivars. All of the cultivars are descendants of a wild S. japonica accession showing limited admixture with S. longissima. This study represents an important advance toward improving yields and economic traits in Saccharina and provides an invaluable resource for plant genome studies.

Abstract. Satellite-based models have been widely used to simulate vegetation gross primary production (GPP) at the site, regional, or global scales in recent years. However, accurately reproducing the interannual variations in GPP remains a major challenge, and the long-term changes in GPP remain highly uncertain. In this study, we generated a long-term global GPP dataset at 0.05∘ latitude by 0.05∘ longitude and 8 d interval by revising a light use efficiency model (i.e., EC-LUE model). In the revised EC-LUE model, we integrated the regulations of several major environmental variables: atmospheric CO2 concentration, radiation components, and atmospheric vapor pressure deficit (VPD). These environmental variables showed substantial long-term changes, which could greatly impact the global vegetation productivity. Eddy covariance (EC) measurements at 95 towers from the FLUXNET2015 dataset, covering nine major ecosystem types around the globe, were used to calibrate and validate the model. In general, the revised EC-LUE model could effectively reproduce the spatial, seasonal, and annual variations in the tower-estimated GPP at most sites. The revised EC-LUE model could explain 71 % of the spatial variations in annual GPP over 95 sites. At more than 95 % of the sites, the correlation coefficients (R2) of seasonal changes between tower-estimated and model-simulated GPP are larger than 0.5. Particularly, the revised EC-LUE model improved the model performance in reproducing the interannual variations in GPP, and the averaged R2 between annual mean tower-estimated and model-simulated GPP is 0.44 over all 55 sites with observations longer than 5 years, which is significantly higher than those of the original EC-LUE model (R2=0.36) and other LUE models (R2 ranged from 0.06 to 0.30 with an average value of 0.16). At the global scale, GPP derived from light use efficiency models, machine learning models, and process-based biophysical models shows substantial differences in magnitude and interannual variations. The revised EC-LUE model quantified the mean global GPP from 1982 to 2017 as 106.2±2.9 Pg C yr−1 with the trend 0.15 Pg C yr−1. Sensitivity analysis indicated that GPP simulated by the revised EC-LUE model was sensitive to atmospheric CO2 concentration, VPD, and radiation. Over the period of 1982–2017, the CO2 fertilization effect on the global GPP (0.22±0.07 Pg C yr−1) could be partly offset by increased VPD (-0.17±0.06 Pg C yr−1). The long-term changes in the environmental variables could be well reflected in global GPP. Overall, the revised EC-LUE model is able to provide a reliable long-term estimate of global GPP. The GPP dataset is available at https://doi.org/10.6084/m9.figshare.8942336.v3 (Zheng et al., 2019).

Negative density-dependent seedling mortality has been widely detected in tropical, subtropical and temperate forests, with soil pathogens as a major driver. Here we investigated how host density affects the composition of soil pathogen communities and consequently influences the strength of plant-soil feedbacks. In field censuses of six 1-ha permanent plots, we found that survival was much lower for newly germinated seedlings that were surrounded by more conspecific adults. The relative abundance of pathogenic fungi in soil increased with increasing conspecific tree density for five of nine tree species; more soil pathogens accumulated around roots where adult tree density was higher, and this greater pathogen frequency was associated with lower seedling survival. Our findings show how tree density influences populations of soil pathogens, which creates plant-soil feedbacks that contribute to community-level and population-level compensatory trends in seedling survival.

Abstract. Early-season crop identification is of great importance for monitoring crop growth and predicting yield for decision makers and private sectors. As one of the largest producers of winter wheat worldwide, China outputs more than 18 % of the global production of winter wheat. However, there are no distribution maps of winter wheat over a large spatial extent with high spatial resolution. In this study, we applied a phenology-based approach to distinguish winter wheat from other crops by comparing the similarity of the seasonal changes of satellite-based vegetation index over all croplands with a standard seasonal change derived from known winter wheat fields. Especially, this study examined the potential of early-season large-area mapping of winter wheat and developed accurate winter wheat maps with 30 m spatial resolution for 3 years (2016–2018) over 11 provinces, which produce more than 98 % of the winter wheat in China. A comprehensive assessment based on survey samples revealed producer's and user's accuracies higher than 89.30 % and 90.59 %, respectively. The estimated winter wheat area exhibited good correlations with the agricultural statistical area data at the municipal and county levels. In addition, the earliest identifiable time of the geographical location of winter wheat was achieved by the end of March, giving a lead time of approximately 3 months before harvest, and the optimal identifiable time of winter wheat was at the end of April with an overall accuracy of 89.88 %. These results are expected to aid in the timely monitoring of crop growth. The 30 m winter wheat maps in China are available via an open-data repository (DOI: https://doi.org/10.6084/m9.figshare.12003990, Dong et al., 2020a).

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The relationship between plant diversity and productivity and the mechanisms underpinning that relationship remain poorly resolved in species-rich forests. We combined extensive field observations and experimental manipulations in a subtropical forest to test how species richness (SR) and phylogenetic diversity (PD) interact with putative root-associated pathogens and how these interactions mediate diversity-productivity relationships. We show that (i) both SR and PD were positively correlated with biomass for both adult trees and seedlings across multiple spatial scales, but productivity was best predicted by PD; (ii) significant positive relationships between PD and productivity were observed in nonsterile soil only; and (iii) root fungal diversity was positively correlated with plant PD and SR, while the relative abundance of putative pathogens was negatively related to plant PD. Our findings highlight the key role of soil pathogenic fungi in tree diversity-productivity relationships and suggest that increasing PD may counteract negative effects of plant-soil feedback.

Abstract. Satellite-based models have been widely used to simulate vegetation gross primary production (GPP) at site, regional, or global scales in recent years. However, accurately reproducing the interannual variations in GPP remains a major challenge, and the long-term changes in GPP remain highly uncertain. In this study, we generated a long-term global GPP dataset at 0.05° latitude by 0.05° longitude at 8-day interval by revising a light use efficiency model (i.e. EC-LUE). In the revised EC-LUE model, we integrated the regulations of several major environmental variables: atmospheric CO2 concentration, radiation components, and atmospheric vapor pressure deficit (VPD). These environmental variables showed substantial long-term changes, which could greatly impact the global vegetation productivity. Eddy covariance (EC) measurements at 84 towers from the FLUXNET2015 dataset, covering nine major ecosystem types of the globe, were used to calibrate and validate the model. The revised EC-LUE model could explain 83 % and 68 % of the spatial variations in the annual GPP at 42 calibration and 43 validation sites, respectively. In particular, the revised EC-LUE model could very well reproduce (~ 74 % sites R2 > 0.5; averaged R2 = 0.65) the interannual variations in GPP at 51 sites with observations greater than 5-years. At global scale, sensitivity analysis indicated that the long-term changes of environmental variables could be well reflected in the global GPP dataset. The CO2 fertilization effect on the global GPP (0.14 ± 0.001 Pg C yr−1) could be offset by the increased VPD (−0.16 ± 0.02 Pg C yr−1). The global GPP derived from different datasets exist substantial uncertainty in magnitude and interannual variations. The magnitude of global summed GPP simulated by the revised EC-LUE model was comparable to other global models. While the revised EC-LUE model has a unique superiority in simulating the interannual variations in GPP at both site level and global scales. The revised EC-LUE model provides a reliable long-term estimate of global GPP because of integrating the important environmental variables. The dataset is available at https://doi.org/10.6084/m9.figshare.8942336.v1 (Zheng et al., 2019).