The emergence of polypeptide catalysts for amino acid activation, the slowest step in protein synthesis, poses a significant puzzle associated with the origin of biology. This problem is compounded as the 20 contemporary aminoacyl-tRNA synthetases belong to two quite distinct families. We describe here the use of protein design to show experimentally that a minimal class I aminoacyl-tRNA synthetase active site might have functioned in the distant past. We deleted the anticodon binding domain from tryptophanyl-tRNA synthetase and fused the discontinuous segments comprising its active site. The resulting 130 residue minimal catalytic domain activates tryptophan. This residual catalytic activity constitutes the first experimental evidence that the conserved class I signature sequences, HIGH and KMSKS, might have arisen in-frame, opposite motifs 2 and 1 from class II, as complementary sense and antisense strands of the same ancestral gene.

The γ‐initiated reversible addition–fragmentation chain‐transfer (RAFT)‐agent‐mediated free‐radical graft polymerization of styrene onto a polypropylene solid phase has been performed with cumyl phenyldithioacetate (CPDA). The initial CPDA concentrations range between 1 × 10−2 and 2 × 10−3 mol L−1 with dose rates of 0.18, 0.08, 0.07, 0.05, and 0.03 kGy h−1. The RAFT graft polymerization is compared with the conventional free‐radical graft polymerization of styrene onto polypropylene. Both processes show two distinct regimes of grafting: (1) the grafting layer regime, in which the surface is not yet totally covered with polymer chains, and (2) a regime in which a second polymer layer is formed. Here, we hypothesize that the surface is totally covered with polymer chains and that new polymer chains are started by polystyrene radicals from already grafted chains. The grafting ratio of the RAFT‐agent‐mediated process is controlled via the initial CPDA concentration. The molecular weight of the polystyrene from the solution (PSfree) shows a linear behavior with conversion and has a low polydispersity index. Furthermore, the loading of the grafted solid phase shows a linear relationship with the molecular weight of PSfree for both regimes. Regime 2 has a higher loading capacity per molecular weight than regime 1. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 4180–4192, 2002

We substantiate our preliminary description of the class I tryptophanyl-tRNA synthetase minimal catalytic domain with details of its construction, structure, and steady-state kinetic parameters. Generating that active fragment involved deleting 65% of the contemporary enzyme, including the anticodonbinding domain and connecting peptide 1, CP1, a 74-residue internal segment from within the Rossmann fold. We used protein design (Rosetta), rather than phylogenetic sequence alignments, to identify mutations to compensate for the severe loss of modularity, thus restoring stability, as evidenced by renaturation described previously and by 70-ns molecular dynamics simulations. Sufficient solubility to enable biochemical studies was achieved by expressing the redesigned Urzyme as a maltosebinding protein fusion. Michaelis-Menten kinetic parameters from amino acid activation assays showed that, compared with the native full-length enzyme, TrpRS Urzyme binds ATP with similar affinity. This suggests that neither of the two deleted structural modules has a strong influence on ground-state ATP binding. However, tryptophan has 10 3 lower affinity, and the Urzyme has comparably reduced specificity relative to the related amino acid, tyrosine. Molecular dynamics simulations revealed how CP1 may contribute significantly to cognate amino acid specificity. As class Ia editing domains are nested within the CP1, this finding suggests that this module enhanced amino acid specificity continuously, throughout their evolution. We call this type of reconstructed protein catalyst an Urzyme (Ur prefix indicates original, primitive, or earliest). It establishes a model for recapitulating very early steps in molecular evolution in which fitness may have been enhanced by accumulating entire modules, rather than by discrete amino acid sequence changes.

Solid‐phase synthesis is greatly dependent on the solid phase. We are interested in the development of a “pellicular” type of solid support where a more mobile polymer is grafted to rigid plastics. Compared to low cross‐linked microporous beads that dominate the field, this approach allows great flexibility of design, as plastics are available as sheets, films, or threads, or can be molded into any shape, as required. Many different polymers or copolymers can be grafted onto any particular shape to give a wide choice of options in the physicochemical characteristics of the actual solid support. As an example of such a solid support, we report on polystyrene‐grafted polypropylene in a particular shape that we have called “Lanterns.” Its synthesis characteristics are compared to the commonly available low cross‐linked polystyrene resins. As well, the handling advantages of these types of supports in multiple synthesis are highlighted. © 2000 John Wiley & Sons, Inc. Biopolymers (Pept Sci) 55: 207–216, 2000

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