Adenovirus (AdV) infections are one of the main causes of diarrhea in young children. Enteric AdVs probably disrupt gut microbial defences, which can result in diarrhea. To understand the role of the gut microbiome in AdV-induced pathologies, we investigated the gut microbiome of a naturally AdV-infected non-human primate species, the Malagasy mouse lemur (Microcebus griseorufus), which represents an important model in understanding the evolution of diseases. We observed that AdV infection is associated with disruption of the gut microbial community composition. In AdV+ lemurs, several commensal taxa essential for a healthy gut microbiome decreased, whereas genera containing potential pathogens, such as Neisseria, increased in abundance. Microbial co-occurrence networks revealed a loss of important microbial community interactions in AdV+ lemurs and an overrepresentation of Prevotellaceae. The observation of enteric virus-associated loss of commensal bacteria and associated shifts towards pathobionts may represent the missing link for a better understanding of AdV-induced effects in humans, and also for their potential as drivers of co-infections, an area of research that has been largely neglected so far.

Until recently, the study of major histocompability complex (MHC) mediated immunity has focused on the direct link between MHC variability and susceptibility to parasite infection. However, MHC genes can also influence host health indirectly through the sculpting of the bacterial community that in turn shape immune responses. We investigated the links between MHC class I and II gene variability gut microbiome diversity and micro- (adenovirus, AdV) and macro- (helminth) parasite infection probabilities in a wild population of non-human primates, mouse lemurs of Madagascar. This setup encompasses a plethora of underlying interactions between parasites, microbes and adaptive immunity in natural populations. Both MHC classes explained shifts in microbiome composition and the effect was driven by a few select microbial taxa. Among them were three taxa ( Odoribacter , Campylobacter and Prevotellaceae-UCG-001) which were in turn linked to AdV and helminth infection status, evidence of the indirect effect of the MHC via the microbiome. Our study provides support for the coupled role of MHC variability and microbial flora as contributing factors of parasite infection.

Until recently, the study of major histocompability complex (MHC) mediated immunity has focused on the direct link between MHC diversity and susceptibility to parasite infection. However, MHC genes can also influence host health indirectly through the sculpting of the bacterial community that in turn shape immune responses. We investigated the links between MHC class I and II gene diversity gut microbiome diversity and micro- (adenovirus, AdV) and macro- (helminth) parasite infection probabilities in a wild population of non-human primates, mouse lemurs of Madagascar. This setup encompasses a plethora of underlying interactions between parasites, microbes and adaptive immunity in natural populations. Both MHC classes explained shifts in microbiome composition and the effect was driven by a few select microbial taxa. Among them were three taxa (Odoribacter, Campylobacter and Prevotellaceae-UCG-001) which were in turn linked to AdV and helminth infection status, correlative evidence of the indirect effect of the MHC via the microbiome. Our study provides support for the coupled role of MHC diversity and microbial flora as contributing factors of parasite infection.

Nature and species conservation often conflict with intensive natural resource or land use. Many protected areas are too small for long-term conservation of viable vertebrate populations, especially in Madagascar, and forests are subject to exploitation for a variety of natural resources. Trying to exclude people from the use of these resources has not been successful during economic, natural, or political crises or when human population growth outruns any development effort. People need economic and other benefits, and conservation measures have to account for these needs. We compiled native and introduced tree, shrub, and herbaceous species used by both people and native vertebrates for three regions, covering the domains of the dry, transitional, and humid forest of Madagascar. We carried out semistructured interviews and group discussions in 12 different villages in each study region in November 2017. People listed 139 utilitarian plant taxa. Our literature search revealed that 72 of these plant species and 13 genera used by people, were also used by 208 different terrestrial vertebrates including 58 lemur species. Application of the Forest Landscape Restoration approach with a combination of exotic and native plant species used by both people and animals could increase the economic value of restored forest habitats for people, thus providing incentives for forest conservation. Plantations of mixed utilitarian trees and shrubs could be integrated into agricultural landscapes. Among land-living vertebrates, lemurs seem to benefit most from this approach. These measures might contribute to a successful array of biodiversity conservation in anthropogenic landscapes.

Climate change will impose new constraints on the distribution of species through desertification. Small-scale endemists common in biodiversity hotspots such as Madagascar are especially threatened. Among them are the gray-brown mouse lemurs (Microcebus griseorufus), which occupy the driest habitats in Madagascar of all Microcebus spp. We studied impacts of aridity on this species to identify critical factors for distributional limits. Accordingly, we compared populations of 2 adjacent habitats that differ in their humidity levels. We found that the more humid habitat provided more high-quality food and maintained a higher population density of Microcebus griseorufus, with individuals in better condition compared to the drier habitat. At the end of the wet, but not in the dry season, Microcebus griseorufus adjusted its home range size to local food plant density, which indicates that individuals optimize food intake in the wet season to prepare for the dry season. We found a negative exponential relationship between food plant density and home range size, which suggests an upper limit for the size of home ranges. According to this relationship, individuals from the drier habitat could not compensate for reduced food availability by enlarging their home range beyond this threshold. Thus, in case of declining food availability during the wet season due to a generally drier climate, individuals will not be able to extend their home ranges to include more food resources, and hence to accumulate enough fat reserves for the dry season. In consequence, they will have to migrate toward more mesic refugia. Migration, however, requires habitat connectivity, which is scarce in Madagascar's largely Int J Primatol (2011) 32:901-913 anthropogenic and heavily fragmented landscape. Our data suggest that upper limits in home range sizes can limit a species' ability to adapt to increasing aridity.

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Parasitic infections disturb gut microbial communities beyond their natural range of variation, possibly leading to dysbiosis. Yet it remains underappreciated that most infections are accompanied by one or more co-infections and their collective impact is largely unexplored. Here we developed a framework illustrating changes to the host gut microbiome following single infections, and build on it by describing the neutral, synergistic or antagonistic impacts on microbial α- and ß-diversity expected from co-infections. We tested the framework on microbiome data from a non-human primate population co-infected with helminths and Adenovirus, and matched patterns reported in published studies to the introduced framework. In this case study, α-diversity of co-infected Malagasy mouse lemurs (Microcebus griseorufus) did not differ in comparison with that of singly infected or uninfected individuals, even though community composition captured with ß-diversity metrices changed significantly. Explicitly, we record stochastic changes in dispersion, a sign of dysbiosis, following the Anna-Karenina principle rather than deterministic shifts in the microbial gut community. From the literature review and our case study, neutral and synergistic impacts emerged as common outcomes from co-infections, wherein both shifts and dispersion of microbial communities following co-infections were often more severe than after a single infection alone, but microbial α-diversity was not universally altered. Important functions of the microbiome may also suffer from such heavily altered, though no less species-rich microbial community. Lastly, we pose the hypothesis that the reshuffling of host-associated microbial communities due to the impact of various, often coinciding parasitic infections may become a source of novel or zoonotic diseases.

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