Studies of novel coronavirus disease (COVID-19) have reported varying estimates of epidemiological parameters including serial interval distributions, i.e., the time between illness onset in successive cases in a transmission chain, and reproduction numbers. By compiling a line-list database of transmission pairs in mainland China, we show that mean serial intervals of COVID-19 have shortened substantially from 7.8 days to 2.6 days within a month (January 9 to February 13, 2020). This change is driven by enhanced non-pharmaceutical interventions, in particular case isolation. We also show that using real-time estimation of serial intervals allowing for variation over time, provides more accurate estimates of reproduction numbers than using conventionally fixed serial interval distributions. These findings could improve assessment of transmission dynamics, forecasting future incidence, and estimating the impact of control measures.
Interacting human activities underlie the patterns of many social, technological, and economic phenomena. Here we present clear empirical evidence from Short Message correspondence that observed human actions are the result of the interplay of three basic ingredients: Poisson initiation of tasks and decision making for task execution in individual humans as well as interaction among individuals. This interplay leads to new types of interevent time distribution, neither completely Poisson nor power-law, but a bimodal combination of them. We show that the events can be separated into independent bursts which are generated by frequent mutual interactions in short times following random initiations of communications in longer times by the individuals. We introduce a minimal model of two interacting priority queues incorporating the three basic ingredients which fits well the distributions using the parameters extracted from the empirical data. The model can also embrace a range of realistic social interacting systems such as e-mail and letter communications when taking the time scale of processing into account. Our findings provide insight into various human activities both at the individual and network level. Our analysis and modeling of bimodal activity in human communication from the viewpoint of the interplay between processes of different time scales is likely to shed light on bimodal phenomena in other complex systems, such as interevent times in earthquakes, rainfall, forest fire, and economic systems, etc.human dynamics | Poisson process | power-law | priority-queue | waiting time H umans participate in various activities every day in an apparently random manner. By assuming that human actions are Poisson processes (1, 2) in which independent events occur at a constant rate λ and the interevent time τ between two consecutive actions of an individual follows an exponential distribution PðτÞ ¼ λe −λτ , one could perform a quantitative analysis of collective social activities as diverse as disease spreading, emergency response, or resource allocation, in particular phone line availability or bandwidth allocation in the case of Internet or Web use.Recent evidence from various deliberate human activity patterns, such as e-mail and letter communications and Web surfing, has shown that human activities are nonPoissonian (3-14), with bursts of frequent actions separated by long periods of inactivity, leading to power-law heavy tails in the distributions of interevent time (e.g., interval between sending two consecutive e-mails) or waiting times (e.g., the interval between receiving and replying to an e-mail), PðτÞ ∝ τ −γ . This nonPoissonian activity should significantly change the quantitative understanding of collective social dynamics, especially when taking into account complex network structures in social interactions (15-17), if those observed nonPoisson activities are solely the behavior of individual agents. Several mechanisms proposed to explain the origin of bursts and heavy tails, including priority-queui...
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